BtaINT0076512 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001354 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:HGNC:21474]
Coordinates
chr11:103928915-103929290:-
Coord C1 exon
chr11:103929175-103929290
Coord A exon
chr11:103929052-103929174
Coord C2 exon
chr11:103928915-103929051
Length
123 bp
Sequences
Splice sites
5' ss Seq
ACGGTGACC
5' ss Score
4.33
3' ss Seq
GGCCCCGGGACTGCCCGCAGGAC
3' ss Score
6.23
Exon sequences
Seq C1 exon
GGTCCATCTTCAAGGGCTTCCAGGAGCCGGACATCCACTTCCTGCCGTCATACAAGTTCGACGTCGGGAAGGACTCGTATGACACCACCTCCAAGCAGAGGACCCCATCCTACACG
Seq A exon
GTGACCGCCCGGGGCTGGGGAGCGGGGTCAGGCCTCCTGGGGGCTTCCGTGTGCGGGGACTCGGCTGGAGGGCAGAGCAGGCCAGCCCAGCCCGCCACCAACCGGCCCCGGGACTGCCCGCAG
Seq C2 exon
GACCGCATCCTATACAGGAGCCGCCACCAGGGTGACATCTGCCCCGTCAAGTACTCCTCCTGCCCCGGCGTCAGGACGTCCGACCACCGCCCCGTGTACGGCCTGTTCCGGGTCAAAGTGAGGCCAGGGAGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001354:ENSBTAT00000001784:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(13.5=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTCAAGGGCTTCCAGG
R:
CTCTCCCTGGCCTCACTTTGA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development