GgaINT0123725 @ galGal3
Intron Retention
Gene
ENSGALG00000001964 | INPP5E
Description
NA
Coordinates
chr17:8569669-8570360:+
Coord C1 exon
chr17:8569669-8569784
Coord A exon
chr17:8569785-8570223
Coord C2 exon
chr17:8570224-8570360
Length
439 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
GTTTCCTGTCTGTCTCCCAGGAT
3' ss Score
10.29
Exon sequences
Seq C1 exon
GGTCTATTTTCAAAGGATTCCAAGAGGCTGACATTCATTTCCGTCCTTCCTACAAGTTTGACATAGGAAAGGACAGCTATGACACCACTTCCAAACAGAGGACTCCTTCCTACACG
Seq A exon
GTAAGAGAGGGTTTCAGAGCAGCGCTCTTGGAAGGCCTGCATAGGCATTTACCTGTCTCCAAAGGGGATTCTCACCTACATTAAAAAGCTGCCTTGAATATGTTCCCTCCTATAGTCGGTCTGCATGAGATTCAGCCATGCTGAAATTTGTCAAGGACAGCAGGGCATGTGGAACTCAGAAGAAAGGGTTGTTGAATGCATGAGAGTTTGTCACAGACTGCCAGTCTTACTTTTTCCTGCCTCACGTCATGTTACAGTGCATTATCCTCTGTGCTCAGAACTGGACACAAAAGTGCCCTTGGGATCAGACATACATTCTTCATGACTGCATCCCTGTCCAAGAATTTCACTAAGTAGAGTCTAATAAATGAGCTGGTGCTTCTCTCCAGCTTTGAGAGATGCAAAGGGAGTTACTGTGAGTTTCCTGTCTGTCTCCCAG
Seq C2 exon
GATCGAGTAGTGTTCCGCAGTCGGTACAGAGATGACATCCAAGCTGTTAAATACTCATCTTGTCCTGTGATCAAAACTTCAGACCACCGTCCTGTGTTTGCATTGTTCCGTGTGAAAGTGAGGCCTGGCAGGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001964:ENSGALT00000003045:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(13.5=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCAAAGGATTCCAAGAGGCTGA
R:
TTGTCCCTGCCAGGCCTC
Band lengths:
246-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]