HsaINT0081001 @ hg19
Intron Retention
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:21474]
Coordinates
chr9:139324729-139325569:-
Coord C1 exon
chr9:139325454-139325569
Coord A exon
chr9:139324866-139325453
Coord C2 exon
chr9:139324729-139324865
Length
588 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
CCTCTGCAATCTTCCCAAAGGAC
3' ss Score
7.86
Exon sequences
Seq C1 exon
GGTCCATCTTCAAGGGCTTCCAGGAGCCGGACATCCACTTCCTCCCATCATACAAGTTTGACATCGGGAAGGACACGTACGACAGCACCTCCAAGCAGAGGACGCCCTCATACACG
Seq A exon
GTGAGGCCTGCCCACCGCTGCGGTGCAGAGTGCTTCCAGGGCAGGCATCTCCCACAGCCGGGAACCGATGCCTGGCGTCAGGGGTCTGAGCCTGGACGGCCTGGACTTGAAACTCAGCTCTGCACCTTGGCCTTGTGGCAAGTCCCCTTTGGTGGAGAACGGCGCCCTCTCCATGGGTGTTTTCAAGGCTGGGTGAGCCGGCTGGCACACAGGGCACCAGCCATGCCCTCGCCTCCGGCCTGCAGAGCCTCTGCCCTCTGCCCGTTGCACCCTCGCTCACCCTCCTGCCAGGCCCATGGCTGCATCTCTGGGCATGTCCCGATATCTGGATATCTGCTGGAAGCCTCAAGAAGCCACTGAGGCAGGGCAGGGTAGGAGCAGCCGCTGTCCACAGGGTCTCTCCAGCGGCGAGGGACAGGCCCTGGCCCAGCTGGCCACAGACGCCAGGCAACAAAATGGGCATGAGTGTCAGGGGTCCCAGAAGGCTTCCTTGTGGGGGGCGCTTGAGAACAGCAGGGAGGTGAGCGGGCCACGCCCCACGGCTCCTCACAAGTAACTGGACCTCCTGCCTCTGCAATCTTCCCAAAG
Seq C2 exon
GACCGCGTCTTGTACAGAAGCCGCCACAAGGGTGACATCTGTCCTGTGAGCTACTCTTCCTGCCCCGGGATCAAGACGTCCGACCACCGCCCTGTGTATGGCCTCTTCCGGGTGAAAGTGAGGCCGGGGCGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384-INPP5E:NM_019892:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(13.5=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCATCTTCAAGGGCTTCC
R:
GCCCCGGCCTCACTTTCA
Band lengths:
246-834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)