RnoINT0074714 @ rn6
Intron Retention
Gene
ENSRNOG00000019039 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:RGD Symbol;Acc:620478]
Coordinates
chr3:3844712-3845485:-
Coord C1 exon
chr3:3845370-3845485
Coord A exon
chr3:3844849-3845369
Coord C2 exon
chr3:3844712-3844848
Length
521 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CTTCACCATCTCTTCTGAAGGAC
3' ss Score
6.6
Exon sequences
Seq C1 exon
GGTCCATCTTCAAGGGCTTTGAGGAGGCAGAAATTCACTTTCTCCCATCCTACAAGTTTGACATTGGGAAGGACACCTACGACAGCACCTCCAAGCAAAGGACACCCTCCTACACA
Seq A exon
GTGAGTATGTAACTTCAGCCTGGCCGCAGGACTCCTGCCAATCACAGCTTATGTCAAGCAGTGTAAGACTTACACTCAGCAAACAGCCAGGTTAGCCAGCCTAAGACTTTAGTCCTGAGGCCAGTGACCACGTGCTCACAGCCTACTGGGGGTAGAGGACAGTACTCTGAACGCATTACAGGCCATAGTTGGATTCACACCGAGTCCATTGCCTGGCACTCTGAGAACAAGAGGGAAACAGCTGCACTCTCCCTGGCTTTTCCACCAGACCATGACTCTTTGGTATACAGTGGCTCCTGGGGACCCTGGAACATTCATGAGGTGAAAGGCAGCCCCTTGTTCTCAGAGGGCTGGAAGGGAACAGACAGCATCCACATAGGTCTTTAAATGCCTAACGATCGTACTGTTGAGTGGGGAGGGCTCCCTGACTGAAACAGCTAGACTAGGGCTGCAGGTTACACTGTGCTGCACGGGACACCTACAGCAGAGTGACAGTCTCTGCTTCACCATCTCTTCTGAAG
Seq C2 exon
GACCGAGTCCTATACAAAAGCCGTCACAAGGGTGACATCTGTCCCATGAAGTATTCCTCTTGTCCTGGGATCAAGACTTCAGACCACCGTCCTGTGTATGGCTTGTTCCGGGTGAAAGTGAGGCCAGGACGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019039:ENSRNOT00000025764:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(13.5=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGGGCTTTGAGGAGGC
R:
TTGTCTCGTCCTGGCCTCAC
Band lengths:
246-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]