DreINT0081763 @ danRer10
Intron Retention
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64381195-64382458:-
Coord C1 exon
chr5:64382343-64382458
Coord A exon
chr5:64381332-64382342
Coord C2 exon
chr5:64381195-64381331
Length
1011 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGC
5' ss Score
5.9
3' ss Seq
TTTTCCTCATGTGTCAACAGGAT
3' ss Score
10.06
Exon sequences
Seq C1 exon
GATCCATTTTTAAAGGCTTTCAGGAAGCATCAATTCACTTCCCTCCGACTTACAAGTTCGACATTGGTTGTGATGTTTATGACACCACGACAAAACAAAGAACACCTTCATACACC
Seq A exon
GTAAGCTTTCTTACTCATTTTATTTGAATACATTGCTGTATACAGTTCCCAGTACATGTTAGTCGACCCTAACATATTTTGTCAGAATATCCCTTCCCTTTTATGTAAATAATAATTGACTCTGGGCCATTGAATTTTTTTTCTAATAATTCCGCTTAGGCTGAGATTTACTTATTAGTTTTTTTTGTGGGACTCATTCTTGAGCATATAATTCAAAGGCTTTTGTTTTGTTTTGATAGGTTTTTTTTTTTTTTTTTTGGTTTGGTTTTTACTGTTGTAGACAGCAAAATAGCTTAAATTGTCCAGCATGGCCATATGGAGCTATAATGTAGTCAAGACCTGGCTAAACTACTTTTGCTGTGTGTTTATCTGAAACTAATCGCACACCTCATTGCACACCCCAAATGTTCATCAGCCAATCAGAAACAAGCTTTCAAAACCCCTGCTGTATAAAATGAGATATTTTATGCAAATCTGGTTTATTGGGTTTACATTAGATTAGTCAGTACCAAAGCCAAAACAGGAAGTAACTAATCAAAATAAATAAAAGTAAAAAATGAGTTCATAAATTAAAATGTTAGGAGAGCATTTAAAAAAAATCTAGCCCAACATAATGTTGCAAATTTTTTATAAATCATATTATATTTCAGTTAAATTTTATATGTTATTTTTATAAATTCTATCTTTTTAAATAATATTTTAATAACTGTTAAATAAACTGTATTGGAAAAAAATGACCAATAAATATTGTCCAACCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATGTATGTATGTATATATACGTGTATATATATGTGTATATATATATATATATTCACTTATAAAATAATATTAATTTTTAAAAGGGATGTACTTTATGCTGGGCCTCTGTAATAATGTTGTATACTTTTCCTCATGTGTCAACAG
Seq C2 exon
GATCGTATTCTTTATCGAAACAGACAAGCAGATGACATAAGAGTGATAAAGTACACGTCTTGCTCGTCCATTAAGACGTCAGATCACCGGCCAGTCATTGGCATGTTTCAGGTCAAACTACGTCCGGGTAGAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926:ENSDART00000162511:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(13.5=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=PD(10.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTTTTAAAGGCTTTCAGGAA
R:
TTGTCTCTACCCGGACGTAG
Band lengths:
251-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]