BtaINT0078237 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009080 | ITGB6
Description
Bos taurus integrin, beta 6 (ITGB6), mRNA. [Source:RefSeq mRNA;Acc:NM_174698]
Coordinates
chr2:36316533-36325679:+
Coord C1 exon
chr2:36316533-36316950
Coord A exon
chr2:36316951-36325456
Coord C2 exon
chr2:36325457-36325679
Length
8506 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCCGGAACTTTGTTTTGCAGATA
3' ss Score
8.16
Exon sequences
Seq C1 exon
GCTTCATTCAATGTGACTGTGAGTTTACCAAACTGTGAGAGAAGGAGCAGGCACATTATCCTAAAGCCCGTGGGGCTGGGGGACGCTTTGGAAATCCTCGTCAGCCCGGAATGCAGCTGTGACTGCCAGAAAGAAGTGGAGGTGAACAGCTCCAAGTGCAACAACGGCAATGGTTCCTTCCAGTGCGGGGTGTGTGCCTGCCACCCTGGCCACATGGGTCACCACTGCGAGTGCGGGGAGGACACGCTGAGCACCGAGTCCTGCAAAGAGGCCCCAGGGCGCCCCTCGTGCAGTGGGAGAGGCGACTGCTACTGCGGGCAGTGTGTCTGCCACTTGTCCCCCTACGGAAACATTTACGGGCCTTACTGCCAGTGTGACAACTTCTCCTGCGTGAGACACAAGGGGCTGCTCTGCGGAG
Seq A exon
GTAGGCTATGTCCAAATGCACCTTCCTGGGAGGCTGTGCAGGTGTCAAGGAGGAGCTTTGCATCCTTGGTCCCTGCCACAGCCGCCTGGACATAATAGGTGCTCAATGAATGTTTGCTGATCAACTGAATGTGTTCACCTTTAGACTGATCTTCACTTATTTTTGTCTGGCTCTGACATTCCCTAGGGGTGAGATCTCTGAACTTACATCTCTATTATTATTTCCCTGGGGATAAAAGATTGGTTCTTTTTGGTTATTACTCAGATGCCACAAAACTGCATGTAATCAAATTCCATTATCTTCCAGGCCATTCTAGTTCAGGCTCCTTGTATGTGACCCAACTCTTAAATGCCTAGTACTTTGGGAAGATAAGAAGCCAAGCTGCTTAAGGGACACACAGCCAAGGACAAGGGACACAAAAGTACTAAGTGGTCTTTCAGGACCTTTGTTCACACCACACATGTGTTACGTGATGTACTAGGTTAGACACGGGGTATAATAAGCTCATTGGGGCTTCCCAGGCGGTGCTAGTGGTAAAGAGCCTGCCCGCCAGTGCAGGAGACATAAGAGACACAGGTTCAATCCCTGGGTTAGGAAGAGCCCCTGGAGGAATGCATGGCAATCCACTCCAGTATTCTTGCCTAGAGAATCCCATGAACAGAGAAGCCTGGTGGGCTACAGTCCATAGGGTTGCAAAGAGTTGGGCACGACTGAAGCAGCTTGGCACGCAGGCATGCATAATAAGATGAATAAGGACATATGTGAAGAAGGCTATGGAAAGGGTAAAAATGAAAAATTGCTTGAATTTTTTGAGATTGAGAAAAACTATAAATAGCAGAAAAATTTACATTCTAGTATCCCTTCTAGATGTGAAATCACTGCAGTTTAAGAATATATTACCTATTAAATGACTATGATAAAATCATTGAGAGATACACACATATATAGTTAAGTACAGTCTAGTAAGACAAGAATTACAAATGTGTTCATATACTTTTAAATGATACAGATTTGTGTTACAATTTAAACAGTAACTGACTGCTGAATTTAAGCCCTCACATCTTTTTTTTTTTTTTTCCACAGTGTGTGAGCAGATAGCTTTTCAAAACAGAAAGCCATTACCTTTAGAGAAAACCTAGCAAGTTATGTTTTTCAACCACAGTGTCAGGAACATATAAAAGAGACTGATTTTCAGAAGAAAAGGCCCGAGAAAAGAAGCCTCAGAGAATCCCAAGCTGTTTGAAAACCATCTGATACCCTTAGAAGTGCACCTCCGTTTCATTTCTTGGCTTCTGCTACTGCAACAGATTCCTCTGAGGCTGCCTTCTTTCTTTCCCCTTGGAGAGTGAAAAGTTTAGGGTCTGTCCAGACTGAGACACATTTCTTGCCCCTTTCATTCAAAGGTGTTTTTCCTTATCTAATGGGTGTGTTTCCAAACCCACACTGGCCCTCTTTTCACGAGATACAGACAGAACACAGCCTGAAGCCAGAGACCATCACCACATCTCAGAAAGAATCTATTCAGCAGAACCTTAGATTGCAGTTCTAATAGAAATCGTTAATAAAATATGTGCTCAAGAGGTTTGAAATTGCCTTTAAAAAAAAAATATGAAATGTAATCAAATACAGTATAACAGCAATACTGACCCCACCTATATTTTACCCTTTAAATCTGAAGTCAAAGAGATCTAAGGCTATAGAAATCCTGGATTGTGTTCAACAACACAGTTCGTCCCAGTGTTTGATGGTCTTTCATTTCATTTTATGTCATGCGTGCAGACAGATATAAATTCAAAGAGTCAATTTGATCTGTCCATTTGTAGTTCAGACAGTCGGACAATACTGCCTCTTTTTGTATCAGATACAGTGATCACTACAGAAATTCTATATAGAAAATACAATTATTTCTGCACTTGGACTCAGAAAACTTTACCAATGCCCTTTTCCTTCATCTATTGGAGTACTCCCCCATCCTCAACCATGACTGTTTCTCAAAAGCAATTTTGTGTTTAGTAACATCTCAAATGATGTCACTCTGTAACTTTCTCTTTTAAAAGTACAATCAAGTACAAAAAGGTACAAAAGTAAATGAATACTCTCTCGCCTCGGCGCTTCCAAGATGACCAAGAAGAGAAGGAACAACGGTCGTGCCAAAAAGGGCCGCGGCCATGTGCAGCCTATTCGCTGCACCAACTGTGCCCGATGTGTGCCCAAGGATAAGGCCATTAAGAAGTTCGTCATTCGGAACATCGTAGAGGCCGCAGCCGTCAGGAACATTTCTGAAGCAAGTGTTTTCGATGCCTATGTACTTCCCAAGCTGTATGTGAAACTACATTACTGCGTGAGTTGTGCCATTCACAGCAAGGTAGTCAGGAATCGCTCTCGGGAAGCCCGTAAGGACCGAACACCTCCACCCCGATTTAGACCTGCGGGTGCTGCCCCACGTCCTCCACCAAAGCCCATGTAAGGATCCAAGTCCTTAGAGACTGAAGAAATATTGGTTTCTCTGAAAAGACAATAAAATGGAAATTATACTTTAAAAAAAAAAAAAAGTAAATGAATAGTTTTGGCCTTAATCACCTAACTATTCTTAGCTCTAAATTCAAGAAAGAGTAACGGAATACGTACTGCGTGCCTGGCATTGTGCTTAGTGTGGGGGTAAAACTGACCCTGGCCTGTGAACACACATGCTCTTGATGCTGTTGTTTCCAAAGCAGCCTGACTATACTACAGCCTCGCTTCTCATGTGTGCATGTGCGTGCTAAGTTGCTTCAGTCATGTCTGACTCTTTGCAATCCCATGGACTGTAGCCCAGCAGGCTCCTCTGCCCATGGGATTCTTCAGATAAGAATGCTGGACTGAATTGCCATTTCCTCCTCTAGGGGATCTTCCCAACCCAGGGATTGGATCTACATCTCTTAGTCTTCTGCATTAGCAGCTGGGTTCTTTACCACTAGAGCCAGCTGGGAAGCCCCCACTTCTCAAGTAGACTCTGCAACATGTTGCTTTTCCAAAGGGCTATTATCATGATGTTCTTCCCGTGCACCTTCTTCCATCCATCTGTAAGATATAGGACTCCACTGATTGTTTTTTTCCCTTGCCCAAATTCCATTAGTCTTTAAAATTTTGATTCTAAGAAACTGGACAAACAGCATTATAGAAAAAACTTCCTACCATTGTGCTCTTAGTTATCAGTCAGTGGCATTCCAGAAAGATCTATCTGTATCAAAAGAGCCTAATAATTTTTCCTTGATCTTTGATTATCATCTTGTTTCTACATGAAGTCATTATAAAGCTATTGTTGTATAAACAGGTACCTTAGATAAGTAGTTGTTTGTGGATATCAGTTAACAACTTTTGTGACTCAGTTAATGGTTCTGAAGTCCCAAAGAAAGGAGAGTTTCTAAATTCTGCAAGGAGCTCTTAGAAGGGTTTTCTAAAATTTCTGCCAAGTAATTTTATATGGAGTGATATACTTGGGCATTCTCAAAGCCTTTCAAAATGCTCATTTCATTTGACAATATTTATACACTATATGTATTTTTCAGAATAAACTGTAATATAGAAATCTCTCCCTATCATGAAAGTAAGTTTCCCCCTTTGATAAGGAATAAACAAAAAGCCATTGAAGTTTAGATGACAGTTTACATATGAAAAGTAAATGAATGGTTTTGGCCTAAATCAGCTAACTATTCTTAGCTTTAAATTAATTAGTTCAATTATGAATTAAATAGGTTATGAAATGCAGTATTAATGTCATGGATCCAGATAAACTTCAACTCATCTTTCATTAGAAAAGTGTATGTCATATTTTGTCTCTCTCCCTACATATGTATACACACACACACACACATACCAGGAGCAGTCAGAATCTAGCTTCAAAATCTTTGTGGTTTATCATTTGTTCTGGGATTACTTACTCCATGTCTCTTAAGGCCAAGTCATGAAGACAGAAAAGTAACCACCTACTGGACCACAGTTTACAAGAGAAAAATCAGAATCCTTCTTTTTGCAATGAATATGGCAGGATCTCCAAAAAATGGAAACCTGCCTCACTTGGGATTTTTTTCACATCTGTTTGGTTTTCAGTATAATTACAGGAGTTTTAATACTGCTAGATAATTTTGCTATCAAATTCTTCGTACTGGATAGTATTTAGGAATCATAATAACTTACGTTTATACACTGCTTGTGTTTCCCAGGTGGCACTAGTGGTAAAGAACCCAACTGCCAGTGCAGCAAACATGAGAGATGTGGGTTTGATCCCTAGGTTGGGAGGATCCCCTGAAGGAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCGTGGACAGAGGAGCCTGCCAGGCTGCAGTCCAGTGGGTCACAGAGAGTCGGACACCACTGAAGCAACTTAGCACAGCACAGCACAGAGCACCCTGCTTATTTATGGGCCAGGCACTGTTCTGAACACTGTTATGTATTACCTTAGGTGATCTTCATAACAGTCCTATGAAGTAGTGCTATTAATAATCTCTCCTTACCAATGAGGAAACTGAGGCACAGAGGGGTTGAGTAACTTCCCCAACTTTGCCCAGCCCAGAAGTACCAGAGCCAGGATCCAGACCTGTAGCGGTCAGCGTCGATGTCCGTGCACTCACACGCTATGTACTCATGCGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCTCTCTCCCTCGCCCTCTTCCCTGGGCATCTCATGCCTTGAATTTCATCCCCTTTCCTCTCCAAGCTCACAGACACTTCTCAGGACTCATAGCTTCTTATCTCTATTGCTGGGAGAAAAATAATATATAAACACATGCACACAGTTGATTCTTGAACAACACAGGTTTGAAGTGCATGAGTCCACTTATATGCAGATTTTTTCAATAAATATATTGGACATATTTTTAGAGATTTGCAACAATTTGAAAATATTCACAGATGAACTATGTAGCCTCTTTGTGACCCCATGGACTGTAGCTTACTAGGCTCCTCCATCCGTGGGATTTTCCAGGCAATAGTACTGGAGTGGGTTGCCATTTCCTTTTCCAGGGGGTCTTCCCAACCCAGGGATCGAACCTGGGTCTCCTGCATTGCAGACAGACACTTTACCCTCTGAGCCATCAGAGAAGTCTCCAGATGTAGCCAGACAGAGATACCAAAAAAGAAAATTTACATATGTTGTGAATGCATAAAATGTATATAGATATTGCTCTATTCTTACACAGGCATAAAGTAAGTGATATTTAATGTAAAATTAATAATGTGTTATTTTTCTTACTGTTTGATAACTTTGCTTTCAAAGCATTATATTACTGTCTAGTATGCCTCTCTCATAATTGGAGAAACTGCAAATCAGCCTACTATTAAAGGTAAGTGGGTTTTAAGAAAAGGGAATCATGTTTGTAATATGAATATGTCCATAATACTATAGCCATTAATATTTTAACAATTCATTCATTGGTGTATAGGCTAGGCTACTCTGAAGCAATGATACTAATCACACTGGGCTGCCATAAAGTAATCATATCATTGTTTATTCATTATCAATGCATAGCTATATCTGTAAATAAACATAATTTCTTTTTCACATTATCTTTTCATTTTTGATATCTAGTGTTAATAATTTGCCTAATATCTGTAGTGTTATAAGATGATTTTGATGTAGGTACTGCCAGATGATTCATCTAGTAAACTTACAGTATCGATAAATACAGTTAGTCGCTCAGGGGTGTCCAACTCTTTGCAACCCCATGGACTGTAGCCTGCCAGGCTCCTCGGTCCATGGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCCCAACCCAGGGATAGAACCCAAGTCTCCTGCATTGCATGAAGATTCTTTTTTTTTTTTTAATTTTTTAAAATTAATTTTATTTTATTTTTGAACTTTACATAATTATATTAGTTTTGCCAAATATCAAAATGAATCCGCCACAGGTATACCTGTGTTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGTCGTCCCAGTGCACCAGCCCCAAGCATCCAGTATCGTGCATTGAACCTGGACTAGGCATCTCATTTCATACATGATATTTTACATGTTTCAATGCCATTCTCCCAAATCTTCCCACCCTCTCCCTCTCCCACAGAGTCCATAAGACTGTTCTATACATCAGTGTCTCTTTTGCTGTCTTGTATACAGGGTTATCGTTACCATCTTTCTAAATTCCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCCTTCTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATATGTACAACTGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGCTATTATAAACAGTGCTGCGATGAACATTGGGGTACACGTGTCTCTTTCAATTCTGGTTTCCTCAGTGTGTATGCCCAGCAGTGGGATTGCTGGATCATAAGGCAGTTCTATTTCCAGTTTTTTAAGGCATCTCCACACTGTTCTCCATAGTGGCTGTACTAGTTTGCATTCCCACCAACAGTGTCAGAGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTATTATTTGTAGACTTTTGGATTGCAGCCATTCTGACTGGTGTGAAATGGTACCTCATAGTGGTTTTGATTTGCATTTCTCTGATAATGAGTGATGTTGAGCATCTTTTCATGTGTTTGTTAGCCATCTGTATGTCTTCTTTACCATCTGAGCTACTAAGGAAGCCCAAGAATACTGGAGTGGGTAGCTGATCCCTTCTCCAGGGTATCTTCCCAATCCAAGTATCAAACCAGAGTCTCCTGTATTGCAGGCGGATTCTCTACCAGCTGAGCTACCAGGGAAGCCCTGTGTAACAAACAAAATATGTGTTGATCAACTGTTTATGTTATCAGTAAGGTTTCCAGTCAACAAGAAGCTGTTAGTAATTAAGTTTGGGGGAAGTTAAAAGTTATTCTCAGACTTTGGACTAAGGGGAGATATAAGAGTAGGGGGCAGTGCCCCAACCCATGGGTTGATGAAGGACGAACGGTATATATACATACACATAATCGCACACACACACACATCAAGTAGCTAACTATAGGCTTCTAGATTATCTCATTTCATGCATATGTGCTCAGTTGTGTTGGACTCTTTGTGACCCAATGGACTATAGCCCGCCAGGCTCCTCTGTCCATAGGATTCTCCAGGCAAGAATACTAGAGTGGATTGCAGTTTTCTTCTCCAGGAGATCTTCCCAACCCAGGGATTGAATCCTCATCTCCTGAGTCTCTTGCATTGGCAGGCAGATTCTTTACCACTGTGCCACCTGGGAAGCCAGCCCATAAATTCTATTTGATATAACATCAGGCAACCTAGTTGATCTTCAGTTAAGAGACCAAGTCAATAAATACACACCATTAGCAAAACACACTACTACACTATTTACACTATCCTATCTACGCTCCTTCCCACCCCTGCACAGCACTCACTTTTTTCCCTTTTTTTCCTTCAGTCTTTTTGATGGTGTTTAAAGGCAAAGAAAAGAGATGGTCCACAAAATCCAGAAGTGGTTTTAGCCCTAAGAAACCCGGAACTTTGTTTTGCAG
Seq C2 exon
ATAATGGCGACTGTGACTGTGGCGAGTGCGTGTGCAGGAGCGGCTGGACAGGAGAGTACTGTAACTGCACCACCAGCACAGACCCCTGTGTCTCCGAAGACGGGATCCTCTGCAGCGGCCGAGGGGACTGTGTGTGCGGCAAGTGCATTTGCACGAATCCTGGAGCCTCGGGACCCACCTGTGAACGTTGTCCCACCTGCGGCGATCCCTGCAACTCTAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009080:ENSBTAT00000011972:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.2=27.9),PF079748=EGF_2=WD(100=25.7),PF079748=EGF_2=PU(32.3=7.1)
A:
NA
C2:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.8=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]