MmuINT0084197 @ mm10
Intron Retention
Gene
ENSMUSG00000026971 | Itgb6
Description
integrin beta 6 [Source:MGI Symbol;Acc:MGI:96615]
Coordinates
chr2:60620211-60628165:-
Coord C1 exon
chr2:60627748-60628165
Coord A exon
chr2:60620434-60627747
Coord C2 exon
chr2:60620211-60620433
Length
7314 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTGTTTTATGTGTTTTACAGATA
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCATCCTTCAATGTGACTGTGAGCGTATCCAACTGTGAGAAAAGAAGCAGGAACCTCATCATAAAGCCAGTGGGGCTGGGGGACACCCTAGAAATACTCGTCAGTGCAGAATGTGACTGCGACTGCCAGAGAGAAATAGAAACTAACAGCTCTAAGTGTCACAATGGGAATGGCTCCTTCCAGTGTGGGGTGTGTACCTGCAACCCCGGCCACATGGGTCCTCACTGCGAGTGTGGTGAGGATATGGTGAGCACGGATTCCTGCAAGGAGTCCCCGGGTCACCCTTCATGCAGTGGAAGGGGTGACTGCTATTGTGGGCAGTGCATCTGCCACTTATCGCCGTACGGAAGCATCTACGGACCTTACTGCCAGTGTGACAACTTCTCCTGTCTGAGACACAAAGGCCTTCTCTGTGGAG
Seq A exon
GTAGGTGATGGGCTCCTACGGGCTTCCTGCCTCTTGTGTGGCAGCTGTTTGGGGACTTTGGTCTTTCATTTCTTCTTCACATTCCTGGGCTCAGCAGTTGTTCTGTAAATATTTTCTGGTGGCTTCAGCGGGTGACTCATTAGAACTGGGATAACTGGACAGTCTCCTGCATTTGTTGCCGTTTCTAACATTCCCGTGGAGTCAGAGCTCTGTCCACTGAACTTACATTTACATTATATTTAAATATCACTATTCCCTCAAGTTAAGCAGATAAAAGTTGAAATGTTGCCTCTCTACTTGCCACCGGGATACCACAAAACTGCTTATGATCTGAATTTCATTGTCTGTCAGACCTTTTCTAAATTAAGTTGCTGGGTCTGACCTGATTCTTATATCTTTTATGTTGGAAAAAATAAGCTAATAGAGACTGCCAAGGGAACAGAATCAAGGAGAAGACACATAGATACTGAGTAGATTTGAGATTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCTCTCTCCCTTTCCTCCCCTCCCCTCCCTTCCCTCCTTAGATTCATAGTCTTCCTGTCTCAGTCTCCCAGGTGTTTATAGTCCAGATGATTACGTCATACTTAGCCACTTACTAACTGCCTACTAATCTAGTATATTCGGTACCAGGTCAAGTGATGCTAGGCAAGAACACATGTGAGGAAAGGCCTATGAAAAGAATGAAAGTAGAAAATAGCTTGGGATTTCTTTAAAGTTTCAAGGAAAGTTTTAAATGTACATATTAATATTTTAATAGATGCTTTTGTACATATAAAAACAATATACCTTAAGAATATACTGCAGAAGCCAAGTGCGGTGGCGCGTTTCTTTAGTCTGAGTACTTGGAGGCAGAGGTAACCAGACCTCTGAGTTCCAGTCCAGACTGTGAGTTTTAGACCAGACAGTTCTACATAGTAAGACCCACATTTTCCTCTCTCAAAAATGAACAAAACAAAAATAAAAAACAAATGAAGAGAATATATTTCAGATGCTAGGAAGGTGGTTTTGTGGTTAACATGCTGTTCTTGGAAGGATCTGAATCTGGCTCCAGCGCTCTTGATACCTTTTATCATCTATATCGCCTATTCCATGGGCTCCTCTGACCATCATGGGCTCCAGAACACAAGTGGCATTCACTGATACAGACAAATACACATAAATAAAAATAATAGCATAAAGTCTTAAGAGCTAAAGAGATGGCTTACTGGCTAAGACCACATGCTACTCCTCCAGAGGCTCTTAGTTCAGTTCCTAGCATCATTTCAGCATCAACTGCCTGTAACTCCAGCTGCAGAGGATCAGAGCCTATGCTGGTACCTGCACTTGTGTGCATAATCACATATGTACAAATAACGAAAATAGTTTAAAAGTAAATCTTTTAAGGGGGGAGAATATGCTATGTTAAACATTATTCTGATGCATGTATTTAATTATAACCTATTCCAACAGGAAAGACAAATATTAACACAGTTTAAAATGGTATAAACATGGTCTGCAAGTGAAGTGTTAACTGGCTGTGGACTAAGCCCAGACACCCTACTTATCACAGGATGAAAGCAGACATCTCATCAAAACACAGTGGCGTTATCTTTACAGAAAACTAAGCAAGTCATGTTTCCAAACCACAGTGTCAGAAACGTAGAAAAGAGAACCATTTCCCCAGTGAGGGAGGTTGAAGTGGGATCAGAAGCAGGTCATGTGACAATTTTTTTTTAAATGAAGAAAATAAAAAGAAAGAAAGGGAAAAAAAACTTATTTTTGGGAAAAGGAAGGAAGGAGAAGAGGGAGGAAGGGAAGCTAGAAGAAATCCAAGAGTTCTGAAAAACACATGAAAGCATTTATCCCAAAGAAAATTAATTTCTTCTCCCTTTTCATTCAAAGGTTCACTTTCTGACTCCAGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTGTATATAAACCCACATCTATGTTTTTATTGGATTTAAGCAGGACACAGCCTGTAGGTGACAAGAACTAATCAATGGCAAAGCCACCATCAAATCATAGGAAGGATGTATCTGCAGAACCCCACACTGCCTTTCTAGTAAAAAAAGCAAACAAACAAACAAAAAAAATTGTTTAAAAAAATGCTTTCTGAAGGGCCGAAGTGTTTGTTATCTAGCCTAATCTAATGGCATAGACATCGTCCCAATATTCCAGCTCCTAAATTCTTGGTAAAAATACCGAAAACAGCAGGAATTGCTAACTAACATGAGCAATCCCCCCCACCCACCCACACACACACATTTCTTTTTTTCTTTTTAAAAATATGTGCAGAATATTGGGAATACACTCAACCTATATACCTGACAGTTAAGAAGGTCAGACAGTAACACTGCTCTTCAAAGCAGATGAAGGAATCGCAAGGAACTCTACTTAGAAACTTCCACCAGTGGCAAGTTCTTTCACACTTCAGCAAATGTAAAATTAATAATAATAAATAATAATAAATACTCGGAAGCCAGTAACCTTCTCTTCTAAAATGTACAGTGAAAGTAAATACAAAATCCCCAGTCAGGATTGGTGGAGTAGTCTCCCTGTGCCAGGAATGCGCTCAGTGCAGGGATGGAAGCTACAGCATATTGTGAAGAGATGCTGTGATCTGCCAAACTTACCAGATATGCCACTCACAACCTGCACGGATCTCACTTACTTCACCAGTAACACCCTCGACGGCATGCTGTTTGTCTGAAAAGCTTTTATCTTGGCGTTCTCTGTCACACGGCATCTTTCATCCATTCGTAAGCACTCAGAGATAGAAGGCTCCATTGATTCTGTTTATCCTTGCCCAAATTCCATTAGTCTATTTTGATTCTAAGAGACTGGGAGCCATACCAGCCAAATGGTATTAGAGGAAAGCTTCTTGTGATTACATACTCAGAGCTATTTTCCAGTGGCATCCCAGAAAGATCTATCCCTCTGAAAAAACGTAAAATTCCCCAGCTCTGGGGTTATCATCTTGCTACTGCATGAGTCTAATATGAAGGTGCTGGTTTGGTGACATGAACAGGTACTGTAGATAATTTGTTGCCAACGACACCGACTGGCACCTTCAGTGACCTAGCCGTTGCTCCTAGAGGCCAACAGAGTAGAGGGTTTCTAAGTTCTGAAAGGTATGTTTTATGTTTTTGCTGTGACAGTCTTTTTTTTTTTTTTTTCAATGTTTCAGGACAGGTTTTCCAAACTTCTGCCAAGGCATTCTTGTGTGCAGAGATACACAGGGCGGCCTCAGGACACCTGGAAATGCACATTTATGCATCTTGCTAATTTTCAGAATAAATTACAACCTAGAGCTTTTTTTCCCCCTTTTGTAGATGTTTCCCCTCTCCTGAAGAAGTAGGGGGAAGAAGTTGGGGTTTTCAAAATCACTTATACCTAAAAATTAATTCTTGGTTTTTACCCAAATAATTTACCATCCATAGTTTTTACTATTCTTGGCTCAATTATGAATTACATAGGCTAGGACAAACAGCAGAAAGGTCTGACTGTCATGGATCCAAATAAATTTGGATCCAGCTTTCATCTGAAGAGTGTGCCATTAAAATTATATAGAGTAATATATAGAGAAACCTCACACACAGAGAACACACACATCCCAGGAACATTGAGATCCCAGCAGTGAAACCACTGAGGTTTGGAGCCTGATAGAGCATTATATGAAGGATTCTTCTGTTCTCAGTCTCTTGAGGCCCAGCACAAAGCCAGAAGCATAGCCAATTACTCGAACCAAATCTACAAGAGAGAAGGCAGCCTTCTGTCCCATTTCAAACTCCTTCCAGCATCTTCTTTAAGTGGAAGCGCGCATCATTTATTTATGTTCACTTTGTTTTTTAATAAAAGTATAGAACTTTTATCCTGATGGCTGATTTGGCTTGCAAACTCTTCCTCCAAACAGCATTTAGAGATGATTCTACTAGGCCCTGTGGAGCTCAGTTTTGGGCCAGGCACCATGGTAAACATGGGGACATGTTAACTTAGGTAACTGCAGATTTTGCTGGAAGGGCAAAACTTCTGGTATAAGATGCCTATATGTGTGCCATCTTTTTCTTTTTTTCCTGAAGGAAAGGATCTGTTATGGTTTTGTAAATAAATACTGCCTGTTTGGAACATCAAATGCTTGTTTTAATACCCATGGCAAACACTCAAAAGTCTACAGAAAGGATACTTATCTGAAACACACTGTTTACCGTTTTAGAGCGTTTCAGAAGCTATCCGGTGGCCTGACCCGGGAGGGAGCAATGCTCACCCCACCCCCTGCATCACTGGCTCTGCCCTGTAAAACTACCAAGGCATCACTTCCCTCATTTCTCTTTTCTGAAATGTATGCAACTCCCTTCTTCTATCTTTATCCATCCGAGTATCCAGGCCCCTCCTCTTGCATGCTGAGTCTGCTCTGAGCACAGTGGTACTCTCATCTCCCTCTTCCTCTCAGCCTTTCCTGCAAGGAGCCTTCTGTTCGAGTTTTGCAGGCTGATGGTCTCCAGAGCTTGTGGATGATCTTGTGCTCTGACTGCTTGCCCTAGAAGATTCAAAGCCGCCTTCCCTGAAGCCTTTTCCTGATGAATCCCAAGCTTCTTCTCTATCCTTTTCATCGGCCTCCTAAGATGCCCAATAGTGTTTTCTCCTCCAAACTCAACCGAACCATAGAGACTTACTGTCCAACCCATCCAAAGCTGATTTTCCTCTTCTGATTTGGAGCCATTCATTCATTCACTCACTCATTCATTCACCAAGTGATCTCCACTTTATGACAGAGATTAGAGAACAGCAGTGACCATGAGCCAGCTTCCACATCAAGTCAAAAGGAAGCCATGCCACCAGCAGGCTATCCAGCCTGTTGACCTGGAGAGAATTCCATCTCTCTTCATGCTGTGCTGTTACCAGTCTTGCCCTGACCTGAGCATTTCAGCTTACAGTGCTTATCAGTTCATCTTTGTTCTCAAAACTGCTGCCATGGGTCAGGTCTCTGCTCCTGCAAGATTTTGCAACCCCTTTTCCTGCCTCTCGTTTGACCTTTCTGTGATGCCGGGATTTCTACAAACATACCTGCCTGTTCAGGTCACTGCCTCGTGTAAAATTTCATAAACTTTTGAGAAAATATTCTTTCTGTAGCCTTGTGACTTCTCATCTTCACTTCAGGCACGCTGTGGACTTCCCCATCTCCCCTTTGCCACAGATATCCGCACCACTGCCTTAGCCCTGCGAGTCTATTGTGGTTATTGTACACATTTCCTTTGCTTCCTATCGGTTTCTCTCTCTGAAATGTATGCAACTCACTTCTTTTACTGTCTTTATCTTCCAAAATCAGCTCAAACATCACTTCTTGAAGCTTTCCCAAAACCCTATTTACTTTAGAAAGTCTTCCACCCTGTATCATAGGCTCCACATGCTATGTTATAATTAGCATTGGTAGTAATAATTTGCCTGCCTTCTACACTAGAGGATAAAATTCAGTAATCTTGTGCTGTCGAATTCTGCATCTTTGTGGCCAAATGCACTCAGGACTGGACAGATAATTGACTCTTAGTTTCCATTATCCACCACATTCTAAAGCTAAAAGTCAGACCAAAAATTGGTGAATGAAATTAGGATTCTTACAATTTGAGCCACTGGGAAGAGGGAGAAAATACCTCCTAATTGCTTTCTGTCTTTCCTGGAACAAAGACCAGGGGTAGGTAGATTTAGTGATGAGCCATGTTATCTCTAAATCCTTTCCACAGGGCATGGCTTTGCTTGCTATTGCTATTGCCATTACCTGGGCTGACCCTATTTTCTGCATGGGAGGACTGTTATACTATCACATCTTCATCACCAATAAACTCTCTGGCACAGAATATATGCTGTTAGAATCCACTGAGTAGTGAATTTGTCAGTGCTTAGCATATGTGAATGAGATAGCTAACCAAAGGAAGTAAAACTAGAATTTTTCACATAGCCACACCACTGGAAGTAGATTTTTATCCCTTTATTTTATAAGGGAGGATTTTCAATTCTTCAATGTAGGCATAAATTTTTTTGCAACCTACTTTTAATAATGGGTCCACCTGTCTACTAGCCCACCCAGCAGAGGTAGTGAAAGAGAAAAGTTATTAGGATATGGGGAAAGTGGACCTGTTCAGCAATTGTTCTTTCAGGGCGAACTTGATCTTCTTGGATAGCAGTTCAGCCCTGTAGCAAACACCAAATACAATTCAGCAACTGCAGACCAGTCCTCTCGGCAGGCAGACACCACACAGGAACCTACAGTCCTTTCAGCAAGCAGACCAGACAGCTGTAGTTTGATCCTGAAGAAACTGCCAGGTTTGCCAACTGGCCTGAGACAAGGTCACAGAAGCCACAACTGCCACAGGAACCTTAAGAGCGGTTCTTGGGCAGTTTCTCTCAATGTCAGAGTCATTCACAAGTTGAGCTCAGCAACAATGCGACATAAGGTGAAATAATACATGTGTGTCTTTAGCGAAATAATGAGGTGGAGTAAACCAAAACAAAGATCAGTGCTCCCCGACCGCTGTGTGTGGGGTCATATTTATATTATTTATATGCCTTCATCAGGCCTCCTTTGGTGTGTCTGCTGTAGCCAAACATCCTTTCACCTGTGTCTGCTTCAGGAAAAGTCTTTCACATGTTCTCTTTAGCAAGACATCCATTCACCTGTGTTCCCCAGCAAACCATCATTTGGCATAACTAACTTTCCAAAGAACTAGAAGTTTTAATTAATGAGTATTAATCCAGGTATGTCCTCCATCTCCATCCTAAAACCCAATGAAGAAAATTTCACCAAAGAGCTTCAATGGCCTTGTCTACATAGTCTCATTTTGACCAATTCTTTATTCTGTTTGCTGTAAGTGATTTTCAGCTAGGAGATAATTTAGTAAATACACAGGGCAAGCAACACTGACCCCCCATCTCTCTATCTCTGTCTCTCTGTGTGTCTGTCTGCCTCTCTGCTTCTCTCTTTGCCTCCCACCCCTCCTGCCTCTGCTTCTTTCTTTGCCTCTGTCTGTCCCACCCCAACCTCTGATCGTGTTTAAAGGTACTCGGAGAAGAGAAGATATTTCCCATCCTGGAAGCGGTTTAGACCATAAGCAACATTTGGGTTTGTTTTATGTGTTTTACAG
Seq C2 exon
ATAACGGTGACTGTGACTGTGGCGAGTGTGTGTGCCGGGATGGCTGGACAGGTGAATACTGTAACTGTACAACCAACAGGGACTCGTGTACATCTGAGGATGGAGTGCTGTGCAGTGGACGTGGGGACTGTGTCTGTGGCAAGTGTGTCTGCAGAAACCCTGGAGCCTCAGGACCCACCTGTGAACGCTGTCCTACCTGTGGCGACCCCTGTAACTCTAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026971:ENSMUST00000028348:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.2=27.9),PF079748=EGF_2=PU(32.3=7.1)
A:
NA
C2:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7),PF079657=Integrin_B_tail=PU(4.8=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types