RnoINT0076420 @ rn6
Intron Retention
Gene
ENSRNOG00000008346 | Itgb6
Description
integrin beta 6 [Source:RGD Symbol;Acc:1303119]
Coordinates
chr3:46675436-46683311:-
Coord C1 exon
chr3:46682894-46683311
Coord A exon
chr3:46675659-46682893
Coord C2 exon
chr3:46675436-46675658
Length
7235 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
GTGTGTTATGTCTTTTACAGATA
3' ss Score
11.61
Exon sequences
Seq C1 exon
GCATCCTTCAACGTGTCTGTGAGCATAACAAACTGTGAGAAAAGAAGCAGGAAACTTATCATCAAGCCTGTGGGACTTGGGGACACCCTGGAAATACTCGTCAGCGCAGAATGTGACTGCGACTGCCAGAGAGAAGTAGAAGCCAACAGTTCTAAGTGCCACCACGGGAATGGCTCCTTCCAGTGTGGGGTGTGTGCCTGCAACCCTGGCCACATGGGTCCTCGCTGCGAGTGCGGCGAGGACATGGTGAGCACGGATTCCTGCAAGGAGTCCCCAGGTCACCCCTCCTGCAGCGGAAGGGGTGACTGCTATTGTGGGCAGTGTGTCTGCCACTTGTCTCCCTATGGAAGCATCTATGGACCTTACTGCCAGTGTGACAACTTCTCCTGTCTGAGACACAAAGGCCTGCTCTGTGGAG
Seq A exon
GTAGGCCATGGCTTCTACGGGCTTTCCTATCTCTCACGCAGCAGCTGTTTGGGGTATTTTTGTCTTTAATTTCACATTCCTGGGCTTAGCAGTTGTTCTGTAAATATTTGCTGGTGGCTTCAGGGAGTGAATCATCAGGATTGGGATAACTGGACTGTCTGTTGCATTTGCTGTCGTTTCTAACATTCCTGTGGGGTCAGAGCTCTGTCAGTGGAACTTATGCCCACGTTACATTTAAATATCACTGTGCCTTCAAGTTAAGCAGATGAAAGTTGGAATGTTGCCTCTCTGGTTGCTACCCGGATTCCACAAAACCGCCTATGATCTGAATTTCATTGTCTGTCAGACCTTTTCTAGATTAAGTTGCTGGGTCTGACCTGGTGCGCCTTTTATGTTGGAAAAAATAAACTAATAGAGACTGCCAAGGAACAGAACCAAGAAGGCTCAGAGATACTGAGTAGATTTGAGAGTCTTCACCTCTCTCTCTCTCTCTCCCTATCTTCATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATAGATATAGGGGAAAGTGACTAAGGAAGACACCTGATGTTGAACTATTCCTGGACTATGGCACCCAGAGAGATGCGCCAACCATACGTGTGCCCTATACACAAGCAAATGTGCATACACACACGATATACGTATATCTATGGAAAGAAAAAAATCGTATCTTTCCCTTAAACCCTTAGCACTTATGAAGGTAAATACCATAACTGTTGTAGTGTGTGGATAGAAGTCAACACGATTCATGGAATACAGCAAGTGTTTAATAATTGTCAGGTAGGGGAACATGTGTCTGAGTAAAAGAAAGAAGAGACATCTCAAAACTAGCATCGACAGCAAGTCACTGATGCTGGGTCCCAAGGTGGAACAGGTTTAATTGGTAAGTGGAGATCTTACAGACCAGAAAAAGGACTGACTCATGGTTACAAAGGAGACCGGAATAGAAAGGAATGAAAGAAAGAGGTTGAGAAGACTGGACTGTTATTTGGGGGGAGGCCTATGCAGGGGGATTGAAGCCACAAGAATCAAGGGATGCATATATTAATATTTTTTTGGATGCTTTTGTGCATATAAAACCAATAAGAATATACTACAGAAGCCAGGTGTGGTGGTGCATTTCTTTAGTCTGAGCACTGGGAGGCAGAGGTAGTCAGATCTCTGTGAGTTCAAGTCCAGCCTGTTGAGTTTTAGACCAGACAGTTCTACATAGTAAGACCCCCCCCACCCATTGCTCTCTAAGAGAATACGTTACAGATGCTAGAAAGATGGTTTTGTGGTTAAGAGTACATACTGTTCCTTAGGGGAGCTGAATTTGGTTCCAACACTCTTGACAGATGGCTTTTTAGCATCTATAACTCCTACTCCATGGGTCTGATGCCCTCTTCTGACCTACATGGGCTCCTGAACATATGTGGCATTCACCGATAAGGACACATACACATAAAGATAAAAAAAAATAAAGTTTTAGGAGCTAAAGAGATGACTTACTGGCTAAGAGCACATTCTACTCTTCCAGAGGACCTTAGTTCAGTTCCTAGCACCATGTGAGGGGCCCCTCAACTGCCTCTAACTCCAGCTCTAGGGGATCAGAGTTGGTAGCTGTACTTGTGTCCACAGACACAAATAGTGAAATAGTTAAGAATGAATCTTGTAAAAAGAGTGGAAAGAATAGGCCATGTTAAACATGAGTCAAAATCATTCTGATGCACGAATTTAATTATAACTTATTCCAACAGGAAAGACAAACATTAGCACAAATTTAAATGGTACAAACATGGTCCACAAGGAAAGGAAGCCCAGTCCCCAGAGGCTGAAGTGGGATCAGAAGCAGAAGGTCACCTGACAAAACTTTTTTTCAAAAATGAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAAAAAGGAAGGAAAGAAGGAAGGAACTTATTTTCAGGAAAAGGAAGGAGGGAAGGAAGGAAACGCTAAAAGAATGTTTTGAAAAATACATGAAAACATTTATTCCAAAGAAAATTATTTCCTTTCCCTTTTCATTCAAAGGGTCACTTTCTGATTCCAATGTGAATGCGCGCGCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTAAACCCACATCAATGTTTTTATTGGATTTAGACAGGACACGGCCTGTAGCCTGACAAGAAGCAATCCATGACAAAGCCACCGTCAGCTCATAGGAAGGATGTACCTGCAGAAGTCCACGCTGCCTTTGTAGTAAAAACACATGTTCAAAAAAAAAATGCTTTCTGAAGGTCCCAAGTGTTATCTAACCTAATCTAATGGCATAGGCATCATCCCAATACTCCAGCCCCTAAATTCTGGGTAAAAATACCTAAAACAGCAGGAAGTGCTAACTAACATGTGCAGTTCCCCCATTTCTTTCCTCCATTTTAAAAATATGTGCAGGATATCGGGAATACACTCAACCTGTATACCGTATAGATAGGAAGGTCAGACAGTAATGCCGCTTCAAATCAGGTGCAGGAATCACAAAAAATTCTACTTAGAAACCTCCAGCAGGGGCAAGTTCTTTCACACTTCAGCAAATGTAAAATAATAATGATAATAATGATGATAATAATAGTAATAATAGTAATAATAATAATAATAATATACTCTACAGCCAGTAGCCTTCTCTTCTGAAATATACAGTAAAAGTCAATGCAAGTATTCACATCCAGTCAGGATTGGTGAAGTAGCCTCCCTATGTCTGGGACTGTGCTCAGTGCAGGGATGGAAATTACACCACACTGTGAAGAGAAGCTGGGATTTGCCAAACTTACCAGATGTGCCACTCACAACTTTCAACAGATCTCACTTACTTTGCCAATAACGTCCCGGACAGCATGCTGTTCTTCTGAAAAGCTTTTATCATGATGTTCTTTTGTCTGAAGGCGTCTTTCATCCATTCGTAAGCACTCAGAGATGGAAGGCTCCATTGATTTTGTTTATCCTTGCCTGAATTCCATTAGTCTATTTTGATTCTAAGAGACTGGGAGCCATACCAGGCAAATGGTATTAGAGGAGAGAGCTTCCTGCGATCATGTACTTAGGAGCTATTTTCCAGTGGCATTCCAGAAAGATCTATCCCTCTGAAAAAGGTAAATGTTTCTAGGTCTTGGGTTACCATCTTGCTTCTGCATGAGTGTAATAGGAAGGTGCTGGTTTGGAGGCATGAACAAGTACTGAAGATAGTTTGCTGCCCAAGGACATGCACTGGCCCCTCAGGGACCTAGCCGATGGCCCGTGAAGGCCAGCAGAGTACAGGGTTTCTGAGGTCTGAAAGGTGTGTCTTAGAGTTTTTCTGTGAGAGTCCTTTTTGTGCAGAGATATACTGGGTGGCCTCAGGGCACCTGGAAATGCACATGTATGCATAATGTTAAATTTTCAGAATAAATAACAACCTAGAGCTGTTTGCCCTTTTATAGATGTTTCCCCTTTCCCGAGGAAGGAAAAAAAAAGATACTGGGAGTTCTCAAAATCTCTTACACCTAGAAATTAATTCTTGGTTTTCACCCAAATAATTTACTATCCTTTTTAATTCCTGGACCCAATTATGAATTACATAGGCTATGAAATACAGCTGAACTGTCTTACTGCCATGGGTCCAAATAAATGTAAATCCATCTTTCATCTGAAATATTTTGCCATCAAAATATTATTCCACACAGAGTAATATAGAGAGAAGCCCCATACACACAGAACACACACACACATCCCAGGAACATTCAGATCCCAACTGCGAAACCACTGTGGTTTGGAGCCTGACAGAACCTTGTATAAAAGGTCTCTTCTGTTCTCATTCTCGAGGCCCAGTCACAAAGCCAGAAACATAAGTCAACGAACTACTCGAACCAAGTCTGCAGGAGAGAAGGCAGTCTCCCATCCGCGGGGAACTCGCCAGCATCTTCTATGAGCCGAAGCGCGCATCATTTATTTTTACTTTGTTTTTAATAAAAGTATAGAACTTTTATCCCTGGTGACTGCTTCTGCTTGCAAACTCTTCCCCCAGATAGCTTTTAGAGATGAGCCCTGTGGAGCTCAGTTACAGCATGGAGCACCGTGGTAAACACAGGCACATGGCACCTCAGGTAACTGCAGATTTTGCTGGATGAGCAAAACTTCTGGTGCAAGATGTCAGCATGGGTGCCATCTTTTTCTCTTTCTGAAGGAAAGTATCTGTTATGAGTTTGTAAATAAATACTATTTGTTTGGAGTGCCAAATGCTTGCTTTAATATCCACAGCAAGCACTCCAAAATCTGTGGAAAGGAGACTTATCTGAAACATACTATTTACCACTTTAGAGCCATTTTGTGGCCTGATCCGGAAGGGAGCAGTGCACAGCCATCTGCACCATTGGCTCTGCCCTGTGGAACAATTATGGCATCACCTCCCCGCTTCTCTCTCTGACATGTATGCAGCTCCCTTCTTCTATCTCTATCCATCGGAGTCTCCAAGCACCTCCTCCTGCACACTGAGTCTGCTCTGGGCACAGAGCTACTCCCATTTCCCTCCTCCCCTCAGCCTCTCCTTCGAGGAGCCTTTCTTCTGTTCCTGTTTTACAGGCTGATGGTCTCCAGAGCTTGGGGATGGTCTTGTGCTCTGACTGCTTGCCCTAGACGATCTGATTCACAGCTGCCTTACCTGAAGCTTTTCCCTAATGGATCCCAAGCCTCTATACTTTTCAACTGCTTACTAAGATGGCCATTTTCTCCTCCAAACTCAACAGAACCGTAGAGGTTCATTGTCCAGCCCATCCAAAGCTGGTTTTCCTTTTCTGCTTCAGAGCCATTCACTCATTCACTCATCATTCATTCACCAAATGATCTTCACTTTATGACACATATTAGAGTACAGCAGAGACCATGAGCCAGCTTCCACATCAAGTCAAAAGAAAGCCATGCCACCAGTGGGCTATCCAGCCTGTTGACCTGTTGAGAATTCTGTCTGTCTGTCTTCATGCTGCGCTGTTACCAGTCGTGCCCCGTCCTGAACCTTTCACCTTACGTTGCTTATCTGTTCATCTCTGTTCTCAAGACCACAGCCACAAGTCAGGCCCCTGCTCCTGCAAGATTTCGCAACTGCCTTTCCTGCCTCTCATTTGACCTTTCTGTGATGCCAGGACGTCTACACACATACCTGTCTGTTCAGGTCACTCCCTTATGTAAAATTTCATAAACTTCTGGGAAAATACCTTCTTCAACCTTGCAGCTTCTCATCATCTCACTTCAGACACACTGTGGACTTTCCCGTGTCCCCTTTGCCACAGACATCCGCACCACCACCTCTGCCCTACAAGTCTACTATGGTTGTTGTACACATTTCCGTCACCTCCTGTTGTTCTCTCTCTCTGAAATGTAGCAATTCCCTCCTCCTAACAGTCCTTGTCTTCCAAAATCAGCTCAAACAGCACTTCTTGAAACCCAAACCCTATTTACTTTAGAAAGCCTTCCACCCCGCCTCGTAGACTCCACATACTGTATTACAGTTGGCGCTGGTAGTAATAATTTGCCTGCCTCCTACACTAGAGGATAAATTCAGCAATCTTATGCTGTCAAATTCTGCATCTCTGTTGCCAAAATGCACTCAGGGCTGGACCCATAATTGACTCTCAGTTTCTATTCTAAGGCTAAAAATCAGATCAAAACTTGGTGAATGAAATTAGGATCATTACGATTTGACCCACTGGTCAAAGAAGAGGTGGAGAAGGCTCCTAATTGCTTTCCACCTTTCCTGGATCAAAGACCAGGGGTGGGTAAATTTAGTGACGAGTCACCTTATCTCTAAGTCCTTTCCAGAGGGTGTCGGCTCTGCTTTTGCTGTTACCTGGGCTGTCCTTATTCTCTGCATGGGAGGTCTGTTTTCCTGTCTGTCCCATCTTCATGTCCAGTAAATTCTCTGGCACAGAGTGTGTGCTCTGTGACAATCTACTGGGTAGTGAATTTGTCAAGTGCTTGGTGTATTCTAACAGGATGGCTAACCAAGTGATGTAAAAGTAGAGTTGTGCACAGGGCCACAACCACCGGAAGTAGATTTTTTTATCCCTTTATTTTTTAAGGGAGGGTTTTTCACACCTTCAGAGTAGGCATACATTTTTTTGCAGCCTACTTTTAATAAGGGGTCAACCTCTCTCCTAGCCCATCACCCAGCAGAGGGATTGGAAGAGAAAAGTAATTAGGCTATGGGGGATGTGGGCCTCTTCAGCAATAGTTCTTTGGGGGCGAGCTCTATCTTCTTGGGCAGCAGTTCAGTCCCATAGCAAACACCAAATACAATGCAGCTGCAGCCCAGTCCTCTAGGCAAGCAGACACCAGGCAGCTGTAGTTCAATCCTGAAGAAACTGTCTGGCTTGCCAACCAGCCTGAGGCAAAGCCACGGAAGCAGCAAACTGCCACAGGAACCTCTCGAGTAGTTCTCGGGTGAGTTTCTCTCAATGTCAGAGTTGTCACAAGTTGAGCGCGACAACGCTCTGTAGGGCGAAACAATACCCGTGTGTCTTTAGCGAAGGATATCAAGGTGCAGCAACCAAACCAAAGCTCAGTGCTCGTCTCCCACTGTCTGTGGGGTCATATGTATACTCTGTCATTAAGCACCCTTTCACCTGTGTCTGCTCCAGGAAAGCAACCATTCACGTGTCTGCTTTAGCAAGACATCCCCAGCAAAACATCATTTGGCGTAACTAACTTTCCAAAGAACTAGAAGTTTCCATGTCACTTTAGCTTGGGTGATATAAAGGTGTGGGTGTTAATCCAAGTGTATCCTTCCTCACCATCCTAAAACCCAATGAACAAAATTCACCGAAGAGCTCCGATGGGCTTGTGTGCATGGTCTCGTTTTGACTGATTCTCTATTCCTTTTGCTGGAAGTGATTTTCAGCTAGGAGACAATTTGGTGAATGCACAGGGCCAGCAACCCCCCACCCCACCCCACCCGTCTCTCTCTGTCTGTGTGTCTGTCTGCTTCTCCGCTTCTCTCTTTGCCTCCCGCCCCTCTGTCTCTGTCTCTTTCTTTGCCTCTGTCTGCCCCACCCCCACTCGGAGAAGAGAAGCTATTCCCCATCCTGGAAGTGGTCTGGGCCTTAAGCAACATTGTGTGTGTTATGTCTTTTACAG
Seq C2 exon
ATAATGGTGACTGTGACTGTGGTGAATGCGTGTGCCGGGATGGCTGGACGGGCGAGTACTGCAACTGTACAACCAGCAGGGATGCGTGTGCATCGGAAGATGGCGTGCTGTGCAGCGGGCGTGGGGACTGTGTCTGCGGCAAGTGTGTCTGCAGAAACCCTGGAGCCTCGGGACCCACCTGTGAACGCTGCCCTACCTGTGGAGACCCCTGTAACTCGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008346:ENSRNOT00000011030:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PD(9.2=27.9),PF079748=EGF_2=WD(100=25.7),PF079748=EGF_2=PU(32.3=7.1)
A:
NA
C2:
PF079748=EGF_2=PD(64.5=26.7),PF079748=EGF_2=WD(100=42.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]