BtaINT0078552 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83532291-83532741:+
Coord C1 exon
chr5:83532291-83532389
Coord A exon
chr5:83532390-83532657
Coord C2 exon
chr5:83532658-83532741
Length
268 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TAACATCTCTTCATTAATAGGTG
3' ss Score
8.37
Exon sequences
Seq C1 exon
ATTGTTGTTGGAGATAAAGTTGTTTTGATGCCCGTGAATGCAGGACAGCCACTACATGCCAGCAACATTGAACTACTCGATAATCCAGGGTGTAAAGAG
Seq A exon
GTAAGTTTGGGAGGAAAGTGAATTTGTTGATTTTTATCACGAGAAGAAAAAGAAATCTTATAGGTTCTTTCATTGTTTTCATAAGCATAAGCCCAGTTTATGCGAGTTATTATTACTAAGATACCTATAGATTTTGAATGGTCCTTTGAAGATATTTTTTGACATACATACCCCATTGTCCAAAGTTGTTCTTTTTTCTCCTTCCTCTAGTTGAAGTAGTAATTCATGGAACCTGCAATCTTATAACTTAACATCTCTTCATTAATAG
Seq C2 exon
GTGAATGCTGTTAATTGCAACACTAGCTGGAAAATCACTTTATTCATGAAATACAGTTCCTATCGAGAAGATGTACTAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313:ENSBTAT00000002982:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTTGGAGATAAAGTTGTTTTGA
R:
CCTTTTAGTACATCTTCTCGATAGGA
Band lengths:
180-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]