GgaINT0122225 @ galGal3
Intron Retention
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:70037838-70038508:-
Coord C1 exon
chr1:70038410-70038508
Coord A exon
chr1:70037922-70038409
Coord C2 exon
chr1:70037838-70037921
Length
488 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATGTTTTTTTTCCCCCCAAGGTT
3' ss Score
9.43
Exon sequences
Seq C1 exon
GTTGTTGTTGGAGATAAAGTTGTACTGATGCCAGTCAATGCAGGGCAGCCACTGCATGCTAGCAACATTGAACTTCTAGATAACCCTGGCTGCAAAGAG
Seq A exon
GTAAGTTCAACAGAGGCAAGGTTATTGTCAAGCTGAGATGTATTATATTGTGTTCTTTACTGGTAGCCAGAGTGCCATAAGCTAGATGCCAGTATTAAACACTGGTTCCAGCTTGGCCTCAGAAAACCAAGAAGAAATGTGTTTATTCTTGGCACAATTCTTTGTGGCACTGAGAGCTTCATGAACCTTGCATGAGTTTTTGAAACCCTCCCTGATGTAAGAGTAAGTTTTTTTCCATAAGCTATGTAGGTCTTTGGTTGACTGTAAGCAGACGGAGTACCCACTGAGTTTTACCCAACATCACCGTCATTTTGAAGCCTAAACATCAGGATACATTAGGTACTGCACATACCTGGAACTAAGCCATATTTTTTGCTACCCTAAATATGGTGTGTTTTTATAGATAAATAGAATGTTTCACGAAAAAAAAAAAATAACAACAACCTTTAAGCCTTTAAGACTCCCATTATGTTTTTTTTCCCCCCAAG
Seq C2 exon
GTTAATGCTGTCAACTGTAACACAAGCTGGAAGATAACTTTGTTCATGAAATTCAGTAGTTACCGAGATGATGTACTGAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071:ENSGALT00000022784:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGTTGGAGATAAAGTTGTACTG
R:
TCCTTTCAGTACATCATCTCGGT
Band lengths:
182-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]