HsaINT0083289 @ hg19
Intron Retention
Gene
ENSG00000123104 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:6181]
Coordinates
chr12:26868685-26869175:-
Coord C1 exon
chr12:26869077-26869175
Coord A exon
chr12:26868769-26869076
Coord C2 exon
chr12:26868685-26868768
Length
308 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GAACGTTTCTTCATTAATAGGTG
3' ss Score
7.51
Exon sequences
Seq C1 exon
ATTGTTGTAGGAGATAAAGTTGTTTTGATGCCTGTGAATGCAGGGCAGCCACTACATGCCAGCAACATAGAGCTTCTTGATAACCCAGGGTGTAAAGAG
Seq A exon
GTAAGTTCAAGTGGAAAAGGAATGAATGTGTTCATTTTTCTCATGAGACAGAGGGAGAAAAAAGTAATATAGTTTCTTTCATTGTTTTCATGAGCATAATCCCAGTTATTCTAATTAATATCCCTAAGGTACATATAGCTGTGATTAGTTATTGCTATTTTTGGATGGTCTCTCAAAGATACTTGTATTGAGCTATATACTTCATTATCCAAAATTGTCTTTAATTTCCTTTTACTAGTTGAACTAATAATTTCTGGTAGAGAATGGAATCTGTAGTCTTATAACTTTGAACGTTTCTTCATTAATAG
Seq C2 exon
GTGAATGCTGTCAATTGCAACACCAGCTGGAAAATCACTTTATTCATGAAATATAGTTCCTATCGAGAGGATGTATTAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123104-ITPR2:NM_002223:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)