RnoINT0076712 @ rn6
Intron Retention
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180713635-180714203:-
Coord C1 exon
chr4:180714105-180714203
Coord A exon
chr4:180713719-180714104
Coord C2 exon
chr4:180713635-180713718
Length
386 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ACATTCTTTCCCATTAATAGGTG
3' ss Score
9.49
Exon sequences
Seq C1 exon
ATCGTCGTGGGAGATAAAGTCGTTCTGATGCCTGTAAATGCTGGGCAGCCCCTGCATGCCAGCAACGTGGAGCTCCTGGACAACCCCGGCTGCAAAGAG
Seq A exon
GTCAGTCAGGAAAGGGGGGAGGGGCTGAGTATTGATCTTCACTAGAGGGAGGAAGGGAGGAAGAGAGGGGAAAGAGAGAAAGGCAGAAAGGAGAGGGAGAGCAGAAAGAACACACAGAGGGGGAGGGATAGAAGGAGGGAGAAAGGGAGAGGGATAGGAGGAGGGAGGGAGATCATGTTATTTCTAGATTCTCTCAAGTTCAATCTTGGCGGTGTTAAGGCATCTGTAGGTATTACCTGTCATTTGAATGGTCCTATGAAGAGGCTTTTATTGAGGCTGACACTTTATTGTCTACAGTTGCTTTTTTCCCTTCTGTTCCTGTTTGCAATGGTGCAGAATATAGAGTCTATCGCCTTATGTCTTTTAACATTCTTTCCCATTAATAG
Seq C2 exon
GTGAATGCTGTTAATTGCAACACTAGCTGGAAAATCACTTTATTCATGAAGTTCAGCTCCTACCGAGAGGATGTATTAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804:ENSRNOT00000040645:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(18.3=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(11.4=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCGTGGGAGATAAAGTCGT
R:
CCCTTTTAATACATCCTCTCGGT
Band lengths:
182-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]