DreINT0083617 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39945102-39946959:+
Coord C1 exon
chr6:39945102-39945200
Coord A exon
chr6:39945201-39946875
Coord C2 exon
chr6:39946876-39946959
Length
1675 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAAA
5' ss Score
0.12
3' ss Seq
CAGTAATTTTTCTTTCCTAGGTG
3' ss Score
8.83
Exon sequences
Seq C1 exon
GTGGTCATTGGAGATAAGGTCGTGTTAAACCCTGTCAATGCCGGACAGCCGCTGCACGCCAGCAGCCATCAGCTTGTGGATAATCCAGGCTGCAATGAA
Seq A exon
GTAAAATACATTAATATAAACAGCATATTGGTTATTTTGAGTGGCATACAATTAATAAAAAAACGTACTGATAGACATTTTAAACAGTGCTTGACAGCAGAACATGATATCAGTGTGTTGTGTTTAATGCCTCATTCACACTAGCAGCGACTTTGTAGCTGCCTGTTGCTCTGCACACGCAGGTCTGCATAGGTATATACAGGATGAATAGAACCGGCCTCTGAGTGAGCTGAGAGAAGATCACGTGAGCTCTTCTGGTGCTCCTATTGGCTGTCACTCAAGAAAGTTGCTCTTTATTTGCTTAAAGTTAAAGGATTCTCAACTCTGTCGCGTCTCTCGACACACCCATCAACGGTCACCGTCGCTTGCGTAGATGGAGGACGCTCACTCTCCATTGAAATGAATCAACGCTTGATACTTTGTCACTCATTGCTTGTCGATTTGTAACTTTGTCGCTTTGTTGCTTGTGGCTTGTCGCTTTGTCACTTATTGCTTTGTCTCTTGTGGCTTGTCGATTTGTAACTTTGTTGATTTGTTGCTTGTGGCTTTGTCGATTTGTAGCTTTGTTGCTTGTCACTTTTCAGCTTTGTTGCTTGTTGCTTTGTTGATTTTTCGCTTTGTTGCTTGACGCTTTGCCGCTTTGCTGCTGCTAGTTGCTCAAGCTGCGTTCACACTAAAGGCGGAAGAAGCGTCAAGCATGAGTGATTTACATGTGAAGTCAATGTAAAGACGTGAATAGACATCCTGCGGCGCGATATGCTCTAATGAGGTGACGCCGCATCTATTGCTCAGTGAATTTGACGCACGTATGAAGCGGATTAGATGCATGAATGAAGCAGGTAAACTCAAAATGTTTATGCGTGATTTATCCGTGCTTGTCGCGTCTGGTGTGAACACAACAATAGTGTGAATGAGGCTTAATGTAGTCAGTGACACGCAGTGATGAATCCCAGCATCCTCATTTTATATTATTATAGTATTTTTAATAATAATGATTTAAATTGGAATAAAATAAAAGTCCCATTTTGCATAAGGTTCCACTTTTTTAAAATTAATAAATATTAATCTATCGTTAAAAGTCATGAAATATAACAAAAAAAGTATTATTATTATTTTTATTATTTTTACTATTATTATTATAAAATCATTTAATTGTATCATTTATTTATCATTTTATTTATAAAAAATTTTTCACTATAAAAATAAATTATGTACTGATAATTGTAAAAATAAAAAAATAACAATATTAATAATAATAATGATTAAAATACAGATTGATTAAAAAAATTAAAAACAGGAAAAAAATATTCAATTGAATAAAGTGACATTGGGTGAACAAAATTAGATTTCTTAATGTCCTGTGGAAAGGTATTTAAGAAGATATTTTTTTCAATACTTTTTACTTAAAATTCTTAGCTTGGCATAAATTTAGGAATGTATATTCATAAAATGTATAAAAATCCTAATATAGTTATTAATTTATTGATTTTTTTCCAGGTTTAAAAGTCTAGAAATAACATTTGTAAAGTTTAAGACATTTTTAATGCACTGAGAAGTGTTAAGATTGAGAAGTCAGCCTGGTCCGATAAAAAATACGATTGTTAAGAAAGTGAATTAAACTAAGAACCGTATATATGAGCACAACTGCTGTGTTTCAGTAATTTTTCTTTCCTAG
Seq C2 exon
GTGAATTCAGTGAACTGCACCACCAGTTGGAAAATCGTTCTCTTCATGAAATGGAGCGACAACCAGGAGATTGTCTTGAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(1.5=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATTGGAGATAAGGTCGTG
R:
TCCTTTCAAGACAATCTCCTGGT
Band lengths:
182-1857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]