MmuINT0084475 @ mm10
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108354607-108356283:+
Coord C1 exon
chr6:108354607-108354705
Coord A exon
chr6:108354706-108356199
Coord C2 exon
chr6:108356200-108356283
Length
1494 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AACTTTGATTTGCTTTCTAGGTC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTGGTCATAGGCGACAAGGTAGTTTTGAATCCTGTCAATGCTGGCCAGCCTCTACATGCCAGCAGTCATCAGCTGGTGGATAACCCAGGCTGCAATGAG
Seq A exon
GTAAGGACATTGGAAAAGTTGAAGTCTGGTATATGGGTGAGGGTTGGATCATAGAAGCAGGCTTTGTGGGGAACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACTGCATGTGACTTGAGCAGAAATTCAGGATACTGCCAGTTCTTCAGGAGAAGAGCCCAAGGCCCACTGTTGACTGTGATGAGGTTTTGTGGGTCTCTGCATGAGTGGTGAGTTTGATAAACTTTGCATCACTGAAGAATCATTCTCTAATTGGTTAAGCCTGAAAATGCTACTGTTGCCATTTTTTTTTCCCTAGCTGGAGGAACACATTTTTTTTTTTCAGTTTGACTCCCTAAGGAGAGTGTTTTATGGTAATTCTCAGGAGGTTACATTACAGGTTGTGTGTAGCCTTGCTACAGTCTCTTATTTTCATCTCTACATCTGCCAATCTCACTGTGTCTCCCTGGGCAGTTACAGACACAGCATCCTAAATCTCTTATGATACGATGTCTGTCTCATGGAGAGGACATGAGCTCTGGATTGTGAAAGATGTGAATTCATATCTCAGCCCGTGGTGCCTGAGCCCTGGAACTGCAGATGAGTTACTTAACATCTCTGTGCATCAGTTCCCAGTCTGAAAGGAGGTCCAGTTTCTTAGGGTGCTGCTGGCGAGTACGTGAGGTGCTGCTCTTGCTGTTAATGACAACCTTGGCGGTTTCAAATGTGTGCAGTGGACCAGTTCTTACCTCAGTATCTCATTCCATTTTATAAGTACTTTATTTCATTTGGCATTTATACATGTGGCTACAGAGCCAGAGACTTAGAGGAGAGAAACATAGCATTCCGAAAGGGGCAGGAGGGAACCAGGGCTTGGAGCTTCAGGTCAGATTTGGAGCATGTGTAGAGACGGGCACAAACGAACCGTTTGTTGCCAAATGTTCTTCCCCGCCACGTGCGTTCTGAGGTTCTTTCTTCGGGATGTATTAGGGACTTTTCTCATGGCCTTTACTCATCGACAAAATACCTGGGGAAAATAAAGCAATTTAAGGTTTATTGTGGCTAAGATGTATGGTGGGGAAGACACAGGGATGGGAGTGGAACAGCTTGACCAGTCAGGCTGTATGTCCGTCCATAGGAAGGAAGCAGAGAGAGTGGCCAGGAGGCAAGGCCAGGCCATCCACCTCAATGCCTTTCACTCTAGAGACCAACTTCCTGAAGCTAGGTCCCTCCTCTTAAAGATTCCAGATCCTGCCAAAACAGCTCCACCAGCTGGGGCCTCTGCCTTCAGACACACAAAAACTCAGGGGACGCTATAGCTCTCTGAACTATATATAACAAGATGTTTGTACTGAAGCCCAGCTGGCCTTCCTGGGAGGAACTTTGGGTCTATATGACATGGCTATTCTAGGAGCTATGTGAAAAATTAACTTTGATTTGCTTTCTAG
Seq C2 exon
GTCAACTCCGTCAACTGTAATACAAGCTGGAAGATAGTGCTTTTCATGAAATGGAGTGATAACAAAGACGATATTCTCAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102:ENSMUST00000032192:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types