RnoINT0076681 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140377565-140379265:+
Coord C1 exon
chr4:140377565-140377663
Coord A exon
chr4:140377664-140379181
Coord C2 exon
chr4:140379182-140379265
Length
1518 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AACTTTCATTTGCTTTCTAGGTC
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGTCATAGGTGACAAGGTAGTTTTGAACCCTGTCAATGCTGGGCAGCCGCTACATGCCAGCAGCCATCAGCTGGTGGATAACCCGGGCTGCAATGAG
Seq A exon
GTAAGGACATTTGAAAAGCCAATATCCCGGTATATGGATGAGGGTTGCACCACAGAAGCAGGCCTTGTGGGAGGGAGGGTTTTTTGTGAGGGAGGGAGGTCGAGAGAAAGAGAGAGAGAGAGAAAGAAAGAGAGAGAGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTTCATACATTTGTGTTTTCTGCATATGACTCTAGCAGTAACTCAGGATACTGCCAATTTTTCACGGGAAGAGCCCAAGGCCCACAATTGGCCGGCATGAGGTTTTGCAGGTCTGTGAGTGTATGGCGAGCTTGATAAACTGTGCGTCATGGAAGAATTATTCTCCAACTTGTTAAGCCTGAAAATGCTACTTCTGCCATTTTTTTCCTAGCTGGAGAAACACATGTTTTCAATTTGACTCCCAAAGGAAGGTGTCTTATTGTAATTCCCAGGAAACCTCCAGGTCATGTGTAGCCTTACCACAGTATCTTATTTTTATCTGTCCATCTGCCATCCCTCTCACTGGGCAGTTACAGACACAGAATCCTAGATCTCTTACGATATCTGTCTCATGAAGAGGACGTGAGATCTGGATGGCGAGAGATGTGAATTAGGAATCTCAGTCTGCGGTCCCCGAACTCTGGGACTGCAGATGAGTCACTTACTCTCTCTGTGCATCAGTTCCCAGTACGAGGGAAGGGTACAGCAGCTCCTCAGGGTGCTGCTGAGGAGTGCGTGAGGTGGTGCCTGGAGACAGTGGTTGCACTAAGAAGCTCTTGCCGTTGATGATGACCATTGGCGTTTTCAGATGTATGCACTGGACTCACTCTTGCTGCAGTATCTCGTTCCACTGTATAAAGACTTTACTTATTTCATTTGACCTTTACATTTGTGGCTGAAGAACTAGAAACGTAGAGGAAAGAAGCATAGCATTCCATAAGGGACAGGAGGAAAGCAGGACTTGAAGCGTCGGGTCAGATTTGGAGCATGTGTAGTGATGGGCGCAGATGGACTATGTGTAACCCAGCATTTCTTCCTCCTCACGTGACTTTTCAGGTTCTTTCTTCAGGATGTCTTGGGTATTCTCATCGCCTCGACAAAGTACCTGATAGAACAGCAATTTAAGGTTTATCATGGCTAAGAGGCCTGGTGGGGAACACACGGGATGGGAGGGGACAGCAGCTTGAACAGTTAGGCTGTGCGTACCTCCACAGAACAGGAAGCTGACAGGAAGCCAGGCCAGGCTCTCCACCTCAAGGCCTTCTTCTCTAGAGTCCAACTTCCTGCAGCTAGGTCCCTCCACTTAAAGGTTCCAGACTCTGCCTACACAGCTCCACCAGCTGGGGACCCTGCCTTCAGACACACGGGTAGGCAGGGGACGTTATAGCTCTCTGAACTATGTATAACAAGATGTTTGTCCTGAAGCCCAGCTGGCCTTACTGGCTGCAGCGAGCAGCTTTGTACGACATAGTTACTCTAGGAGCTATGTGAAAAATTAACTTTCATTTGCTTTCTAG
Seq C2 exon
GTCAACTCCGTCAACTGTAACACAAGCTGGAAAATAGTGCTTTTCATGAAATGGAGTGATAACAAAGATGACATTCTAAAAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.124 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(59.3=97.0)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(37.0=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]