GgaINT0021945 @ galGal3
Intron Retention
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19072934-19073592:+
Coord C1 exon
chr12:19072934-19073032
Coord A exon
chr12:19073033-19073508
Coord C2 exon
chr12:19073509-19073592
Length
476 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AGTTCTATTTCTCCTTTTAGGTC
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTTGTCATTGGAGACAAAGTAGTCCTGAATCCTGTGAACGCTGGCCAGCCTCTTCATGCTAGTAGTCATCAGCTTGTTGATAATCCGGGATGCAATGAG
Seq A exon
GTAAGGGCAGAGCTGATAGTACAGGAGCTGGGAACAGCTGTACAAAGCTCTGTATGTTTCAGCTAAGCTGCTAGGGCTTGTGTTGTAGGAAAATTACCTCGGTAAGTTCATTAGCACCTGTGGTGATGTCTAAGAATGATTATCTTGTAACTCATCTCCTTAATGTCTTTGCAAGACTTCCCTTGTACCTTTTGTACACTGAGCAAAGGTTGAAATTTGGTCTGTTTTTTTGACTGGGTAGAAATGAGATTATTCTTCAAGATCAATAGCCATGGCTCTGTGGTGCGTGACTTACTGGTGAGTCAGACCTGTAGTTGGATTTTTCTGGAGCAGGTGCAGAAGTGGTTTTATCTAAAGTAAAGCAACAGGGTTTGTAGTACCCCGAACAACAGGTTAAAAAATAAGGCAGTAGTTCTGTGGCAGCAACTTATGCAAGCACAGGGCAGTGGGACTAACAGTTCTATTTCTCCTTTTAG
Seq C2 exon
GTCAACTCTGTGAATTGCAATACAAGCTGGAAAATAGTCCTTTTCATGAAATGGAGCGATAATAAAGATGACATCCTCAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013505:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]