DreINT0083678 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35708197-35708947:-
Coord C1 exon
chr11:35708849-35708947
Coord A exon
chr11:35708281-35708848
Coord C2 exon
chr11:35708197-35708280
Length
568 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
CCCTCTGTGTTTCTCCTCAGGTG
3' ss Score
13.73
Exon sequences
Seq C1 exon
GTTGTGATTGGGGACAAAGTAGTTTTGAATCCGGTAAACGCAGGACAGCCTCTCCACGCCAGCAGCCATCAGCTGGTGGACAATCCTGGCTGTAATGAG
Seq A exon
GTACATCTGCCTTTACTTTGAGCTTCATACTTAAAATCAATGGGAGCTTTTGGCAAAAATGACATTTAATTTCAATAAAATGTTTACAATTTAAAAACACTTTTAAACTAATTGTCAAAATGGATGAAAGATTTGCACCTAACGTCTTTTTACACAGTTTTTTTTAACTACCTCACACGTTTCTGTTAATATTATTAAAGCAATGGCTAATCAGAGATGTAGTTCTGTTGAGCTGCATACTTTCAAATTCTCTCACCATCAGCACCAGCAAACTCCTGAAACTATGAACTAAGGGAATCATTTTGCGGCGTCAGTGATTAAAACTGGAGTTTCAGCATAACTAATGCTTGACTAACGACACAGACGGACATGTTCTGACGAGACATTCCTTCAATTAAAATGATTTTATTTGTAATCAATTTATAAACAGATGTTGTCCACAAATCCTGAATCTGAACATCCTGACTCTTTATGCTCTGGTAACTCTCATTTCAGAGCCAGAATGACTCTGTAGTGTGAAATGTAGTTTGTATTAAGTGCTGTTTTTTCCCTCTGTGTTTCTCCTCAG
Seq C2 exon
GTGAACTCGGTGAACTGCAACACGAGCTGGAAGATTGTTTTATTTATGAAGTGGAGCGACAACAAGGAGGCTATTCTTAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(1.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]