MmuINT0084522 @ mm9
Intron Retention
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146366940-146371386:-
Coord C1 exon
chr6:146371228-146371386
Coord A exon
chr6:146367039-146371227
Coord C2 exon
chr6:146366940-146367038
Length
4189 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
AGTGTGTTTCTGATTCCTAGATC
3' ss Score
7.19
Exon sequences
Seq C1 exon
CTGCTGCACATAAAAAGCAACAAGTACCTGACGGTGAACAAGAGGTTACCTGCCTTGCTGGAGAAGAATGCCATGCGAGTGTCACTGGATGCTGCAGGGAACGAAGGCTCCTGGTTCTACATCCATCCGTTCTGGAAGCTGAGAAGCGAGGGTGATAAT
Seq A exon
GTACGTGTGTGCAAAGCCAAGAGGGAAACAAACATCGTGTGATGTTCTTAGAGAACATATCAGGAAGTACACACAGAGATGGGAAATGCAGTCTTCAGCCAGTTAATTCTTAACGAATTAAGGCAGCATACGAAGTAATGGGTTACATTGCATTTTTTGCACACATTTTGCGTTAGCATTTTTAAAACTAGGCTAAATGCATTGGTTTACAGTTTACACCATGCTCAGAAATCACAGGCCAGATATCAGCTCAAGTTAGAGGCATCTCCAGGCAGAGTGTGTGAAGTCTTTTCAAAGAGGCAGGTTATTCTTTTGCTTAGTCAAGATTGAGCTTGCTTGCAAGGAAGAGGACCGCGGTGCCTCCTGGCCTTCGGAATGAACAGGGGAACAACGAGAGTCATGACAAAGCTCCGTTCAGTGTCTTCACAGCCAACTCCTTACAGTGTTGTCATGGTGTGCAGCATCTGAGGGAGGGACTGTGGCATGCTCTCGTTGTTGTTGATGCCTGCAGAGTGGGTTGTGCAGAGTGGTGTCATGACTGCTTACATCAGCAGTTCTCAGCCTTCCCAGCGCTGAGACCCTCGCATACAGTGTCTCTTGTTGTGGTGACCCCAACCATAAAATTATTTTTGTTGTTACTTCATCACTATAATTTTGTGACTTTATGAATAGTGATGCAAACATCTGTGTTTTCCAATGGTTCCAAAGGAGTCATGATCCACAGGTTGAGAACCATGGGCTTAGGTCTTCTCTGCTATTTTGTAGAGGGGGTGGGGGGAGTGAAATAATTCCATAGGAACAATAGTTTCATCTTATTTTTTTTTTTGAGACAGATCTCACTGTATTCCTGTCCGACCTAGCATTTGGTATGTGGTTTAGGCTGACATCTAACTTGCATTGATCCTCCTGCCTCAGTACTAGTTTACGGGCTGCTGGAATTACAGGTGTGCACCACCACATCTGGCTAAAAGTTCGATATTTTTGTGATAGTCCTTAGCACTTGGAAGATACTCAAAAAAGGCTGGTTCATAAAATAAAATTCCTTACAAAGGCCACATGAGCAATATTGCCATGTGAGATAGTTAAAGTGACTGGCATGAAAATAAAATTCTCTGTCAGAGTTTTCACAGTCAACCCTTTGGTTACATCTTTAGTGTGCTTTGAGGTATTTTGTGTGTTTGAAATGTCTTCTTTTTCTAGAGAATTTTAAAGTGTGAATTCAATTCCACAGGACATGGGCGCCGTGATTTAATTGGGTTAATAAGTTTTCTGGTGATGTCTTCCTTAGGTAAGGCTTGCTATGCATGGCATGCAGGAATGTGTCAGATTCCTTGGAAAGTCAGTGCTCCCCTCCCCCATATAGTTGATCTGTGCAGAGAGCATGCTACATCTTTACTCTGAGTGTGTATGGTTAGTTACAATCAACTCTCAATTAAAATGCAGTTTGTGAACTGCAGCCATAGAGGATACCTTTCCTTCTAGTGCTGTATCCAACCCTGCAACCCCCTCGTTACCATCTATGAAAACTAAAGAGCAAACCAAAGGAATTGTAAGCTCAAACCACTAAAGAATAAGATGGCATGCTGGAATGGGCCTCTCAGCTTTTTAGTTAGCTGTGGTCTCCTTTCTCTTCCTCTCCCAGCTTGGAAGCCTCTTGATGGTATCGGTAGAGAGTTGAATGTAACCAACTGCTAAGACAATTAGTTTCAGTAGAAACAAAGTCTTTCACGGAAGCCTGTTTTTTTGTGGCCACCCACAATGCGTTAAGTTGCTCTTATCTGGATTCGCTCCACGTAGCCCAGCTGTAGGTCTTCCATCATGCTGCTTGCTGAAATAGTCACTGCGTCTGTTCACCTCCATGTAGCTTTGTGTGTGATGAAGGTTGTGGAAGAAGGCTGGCATGCCCACAGCCCCATATCAGCTGCACATGGACTTGTATCACAACTCTCACTCTCTCTTTGCTAGAATAGGCAGCATTTTGAAACATCAACCTACTGTAGTTTGCTGAAGGCAGTTGCAAATACTATCTCTTTGAATGGTTTGATCACGACTGAGTTTCTGCAGAGGTATATTAAATAAAGAGGGAATCTCTATGTTTAGAGGGATTTTTTAAATTGCAGTCTACTATTTAGCAACGCGTGAGGTAGCGATTTAGGTCATGCACATTCAACAAGCAGACCTCTGAGCTCAAGCGGAGGGTGATGCAGATACCAGCCTGAGTCCAGGCTGTTGGTTGTACTAAGTGCACGAGGCTGCACTCCATAGGAACGCACAGTTTGGGGAAAACACTTACAGGCTCCCTCACACTCCACCATACACAAAGTCCTTGGCTGCTGCTAAGTTACCAGAAAAAGCATGAGGGACACCCATGAATGGAAACAGCAATGTTTCATTCCCACTTATCCTCTTCACGTTTGAGTAGTTACTTTTTCATTTTCAATCTTGACCTAAGCAGACAAGGGTCCTTTAAGCCGATGGTAGACTGCAAGGTGTGAAGAGGTGGGATTGCTTTTTAAGTCAGTAGAAAAGCCTAGAGCTTAGGGAGAGATTCTATCTAGCAAGCGGACTTTGCTGTTTTACACAGCGATGCGCCTGACATCTTTTGCAGAGGTGGAACAAGGGTGCTGGCATTCTGACTCCCATTTTGAGGTTCTTCTTATTGTCCCAGGTACCACTTCAAAGCAGGGACAGCCGGCTACAGGTGGCACCACAGCTTGAATGTGGCATAGCCGTTACGTCGCCCAACAGATGCTTCAGGGATTTCAGTTTCTTTGCTAAGATATGCTAGAGTGCCAAGGTGGCTGACTGCAAGATGTAAAATAAAATGCCCTCATCCTCCAGTTACGTGCCAAATAGACAGCTTCTTAGACAGCACCCCGATCCTTCAGTACTTCAGGTCTGGAGCCTCACTCCCCTGAGAATAATTCCAGTGTATCTCGTAATGTGGGCTGAGACTGTGGGCTGTTTCTTAGACACATTTGTGTTCTTCCTAGCCCCTCTTAACTGTCCTCTAAAACAAAGATTTCCTTATCTTTATTTTCTGTACACAAGTGTCTGCCTGCATTCATGTTTGGAAGGTCGGACAAGGACCAGAGACCAGCCCCACAAGCAGCAGGTTCTTGTCCCACAAACCCAAGGGCAGTCTTTCTGTGTCTGATTAGTGAACCTGAGGCTTCTCTGACATACTCAGATCTCCAGATAGTTTGGGGCAACACAACTCCTCAACATTATCTACTCAGGGTCACATGACACTGGAAGTGTGAACGAGTGTTTTGGTCTAAGGAACATGGAGATGCCCTGGCTTCCAGTGGTTTTCTTAGTTACAGATCAAACTAATCTATAACTGTTCTAATATGCAACTGGTGTGAAATACGCAAAGGGAAGGGTTTTGATTTTGCTTCAGAGTGGGGAAGCCCCACGTGTGGTAGCAGAGATGGCATAAGAACCATCCTCTAAAGAAATCTAGCAGTGCACGTCTCTCTAGTCACTAGATCACACCACTACTGCCACTAAGAAAAGGGAACTTTAATTGCCTCAAACTGAGTTAGATGCAAGTAAGTAGACATTGTCATGATTGCACAGACAAATGTAAACATAGAATTGGTATTTAACGCTTTCCCCTGGAACCCTGACAATTAAGAACCACAGGCTCCTACAGTTCTTGTTTTGGACATATCAAATTAGAGGGACCCAAAGGCTCCAGGCCAGACGCAGAATAAATATTTTATAAAGTCTTGCCTTGCTTTATATTTCCTGAATACAGAAGAGGACATGATGCTTCATAACTCTGAGATTAGGGGATGATCGGTTAACCAGACTTGCCTTTTAGCGGGGAGGAGACACTGATCTTGTTCTCTGCTGCCCCGTTGAAATTCTAAAGAGCGTCTTGGCAGCCACCTTTAATATGTCTGCTGCAAGGTCTTGTGGGAGGAAACTAACCCAATTGTGGCTTCTGAGGAATCCAGCTGACATGGGGACCAATGAGGAATGGGACTGGACCACCTTCACTGGACAGGTTTTGGCAGGGCACCAGAGGATGCGACTGTATGCATCAGTGTGTGTTTGAACATGCTTCTCAGGGAGAAGAGTCAAGCTGTAGAAGATGACAGCCGGGGAGGCAGGTTGCTGGTGAGGCTTGCTGGGAAGTTTTTAGCCCCACAGAGCATCAGAGTGTGTTTCTGATTCCTAG
Seq C2 exon
ATCGTCGTAGGAGATAAAGTCGTTCTGATGCCTGTAAATGCTGGGCAGCCCCTGCATGCCAGCAACGTGGAGCTCTTGGACAACCCAGGCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-Itpr2:NM_019923:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: