RnoINT0076701 @ rn6
Intron Retention
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180714105-180718623:-
Coord C1 exon
chr4:180718465-180718623
Coord A exon
chr4:180714204-180718464
Coord C2 exon
chr4:180714105-180714203
Length
4261 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
AGTGTGTTTCTGATTCCTAGATC
3' ss Score
7.19
Exon sequences
Seq C1 exon
CTACTGCACATAAAAAGCAACAAGTACCTCACCGTGAACAAGAGGTTACCTGCCTTACTGGAGAAGAATGCCATGCGTGTGTCCCTGGATGCTGCAGGGAACGAAGGGTCCTGGTTCTACATCCATCCCTTCTGGAAGCTGAGAAGCGAGGGTGATAAT
Seq A exon
GTACGTGCAAGCAAAGCCACAGGGGAAACAGACATTACGCGGTATTCTTAGAGAACCCAGGAAGTACATGCAGAAAGGGGAAATGCAGTCTTCAGCCAGTTAATTATACACGATTTAAAGTAGCACGTAAAATAACGGGTTACATCATAGCATTTTTGCACATATGTGTTACTGTGCTTTCTAACACATTTTGCGTTAGCATTTTTTTTTTTTAAAACTTGGCTAAGCTAAATGCATTTGTTTACAATTTATACCATGCTCAGAAATCACAGGCCAGATGTCAGCTTCTGTTAGTCATCTCCAGGCAGTGTGTGGAGCCTTTTCGAAGAGGCAGGTTATTCTTCCACTTAGTCAGGATTGAGCTTGCTTGCGAGGGAGAGGACCACTAGGCCTCCTGGCCTTCTGAATGGACAGGGGAACCTCGAGAGTCATGGCAAAGCTCTGATCAGTGTCTTCACAGCCAACTTCTTACGGTGTTTGAGGGGCTGTGACATACACTCATTGTTGTTGACTGCAAAGTGGGATTTTGCAAAAGGCTGTGATGTCATGATTGCTTACATCGGCGCTTCTCAGCCTTCCAAGTGCTGCAACCCTCCACACAGTGCCTCATGTTGTGGTGGCCTCCAACCATAACATTATTTATAATTTCACAACTTTATGAATAGCAAGGCAAACCTGTGTTTCCCAATGGTTCCAAAGGGGTCATGACCCACAGGTTGAGAACCAGGGGCTTAGTTCTTTTTCTGCTCTTTTGTAGAAGCAGGGAGGGACAGTGGAATAATTCCATCAGAACAATAGTTTCATTTTATTTATTGAAACGGATCTCACTATGTTCCTGCCTGACCTGGCACTTGTTAGGTGGTTTAGGCTGACGTCTGACTTCCTTTATTCCTTCTGCCTCAGTACTTGCTTACAGGCTGCTGGGATTGCGGGTGTACACCACCACATCTGCAAAGGTTTGACATTCTTGTGATAGTCCTTAGCACTTGGAAGATGCTCAGTAAAGGCTGGCTCACAAAGTAAAACTCCTCACAGAGGCCACACGAACCATACATGGCACGTGAGAAAGTTAACGTGAACTCTGATGCGAAGATGAGTTTCACAGCCGACACTTTGGTTACGTCTGTAGTGTGTGTGTAGGTCTTTTGTGTGTTTGAAATGTCTTCTTTTCTCTAGAGAATCTCTTTTATTTTTCCAGTGAATTTTAAAGTGTAAATTCAATTCCACAGGACATGCACGCCATGATTTAATTGGGTTAATAAGTTTTCTGGCGATGTCTTCCTTAGGTAAGATTTGCTATGCACGGCATGCAGGAATGTGTTGCAATCCTTGGAAAGTCAGCGCTCCCCTCCCCCAGTCAGTGGGTCTGTGCAGTGAGCACGCTGCATCTTTCTTTACTCTAAGTGTGTAGTGAATTACAATCAACTCTCAGCTACTCAAGGGCTAAAGTGCAGTCTGTGAACTGCCGCCATCTAGGATACCCGTCCTTGGAATGCTGTACCAACCCTGCAACCCCCATGGTGCCATCTATTGGTAGTCATGAAAACTAAAGAGCGAGCCAAAGGAATCCTAAGCTCAAACCACAAAAGAACGTGATGATGGCACGCTGGAATGGGCCTCTGGCCTTTTAGATTAGCTGTGGTCTCCTTTCCCTTCCTCTCCCTACTCTGAAGCAGCTTGATGGTAGCAGTAGAGAGTTGAATGTAACCAACTACTTTAGACAATTAGTTTCAGTAGAAAGTGGAAACAAAGTCTTTCACTGAAGCCCCTGTTCTTTTGTGGCCATCCACAATGCGTTAAATTGTTCTTATCTGGATCGGCTCCATGTAGCCCAGGTGCAAGTCTTCCTCCACTTTGCTGCTTGCTGAAACAGTCACTGTGTTTGTTCACCTCCATGTAGCTTTGTGTGTGACGAAGGTTGCTGAGGAAGGCTGGCATGCCCACAGCCCTGTGTAAGCTGCACACGGATTGTGTCACAACGCCCCCTCTCTTTGTTAGGAATAGGCAGCATTTTGTAACACCAACCTACTGTCGTTTGCTGAAGGCAGTTGCAAATACTGTTTCTTTGAGTGTGGTTTAATCACCGCCGAGTTTCTGCAGAAGTATATTAAATGAGGAGGAAGGCTCTACGTTTAGAGGAAGTTTTAAACCACAGTTTGCTACTTAGCAATGAGTGAAGCAGTTAGCTTGTGCTCATTCTACAAGGAGATCAATGAGCCCAAGAGGAGGAGGATGGCAGCCGGAGTCCAGGCTGTTGGTTGCACTAAGTGCACGAGGCTACACTCCGTAGGAATACGTGGTTTGGGGGAAGCGGTCACAGGCTCCCGCACACTCAGCTATATACGAAGTCATTGGTTGTTGCTAAGTCACTGGAAGCAGCATGAGAACAGCCATGAGTGAAGCATCAATATTTCCATATTTGAGTAGTTACTTTTTCTTTTCCATCTGGATCTAAGTAGACAAGACAAGGGTCCTTTATGCTGATGGTAGATTGCAAAGTGTGAAGAGGCAGGATTGTTTTGTAAGTCAGTAGAAAATCTTAGAGCGTAGGGAGGGATTCTATCGAGCAAGCAGAATTTGCTGTTTTAAAGAGCGATGTGCCTGGCATTTTTTTTCTTTTTTGCAGAGATGGAACTAGGGTGCTGGCATTCTGACTCCCATTGTAAGGTTCTTCTTGTTGTCCCAGGAACCACTTCTAAGCAGGGACAGCCAGCTCCAGGTGACACCACAGTCAGTGGCCTGAATGTGGCATAGCTGTTACGTGGGCCCAAAAGATGCTTTGGGGATTTCAATTTCTTTGTTAAGATATGCTGGAGTGCCAATGTGGCTGACTGTGGGATGTAAAATAAAATGCCCTAGTTCTCCAGTTATGTGCCAAATAGACAGTGCCTCGCTCCATCAGCACTTCAGGCCTGAAGCCTCACTCCCCTGAGTTATCTCTATATCTATCTATCTATCTATCTATCTATCTATCTATCTATGTATCTATCTATCCCCAATATTCCTAGTAATGTGAATCCCCTGATTGTGGGCTAGTTCTTAGACACAGTTGTCTTCTTCCTAGCCCCTCTTAACTGTTCTCTAAAACAAAGACTTACTTATCTTTATTTTCTATACACAAGTGCCTGCCTGTTTTCATGTTTGGAAGGTCGGACAAGGACCAGAGACCAGCCCCACAAGCAGCAGATGCTCGTCCTACAAACCCAAGGGCATCCTTCCTGGGTTTGATAAGTGAACCTGAGGCTTCCCTGATACGCTCAGATCTCCAGATAGTTCAGGGCAACACAACTCCTCAACATTATCTACTCAGGGTCACATGACGCTGGGAGTGCGAATGTGTGTTTCGGTTTAAGGTGCATGGAGATGCCCTGAGTCCCAATGGTTTTCTTAGTTGCAGATCAAACTAATTCATAACTGTTCTAATATGCAACTGGTATGAAGCACGCAAAGAGAAGGTTTTTGATTTTGCTTCAGGGTGGGAAAGCCCCACAGGTGGGGCATAATAGCCATCTTCTAAAGAAATTCCGCAGTGTACATCTCTCTAGTCACTAGATCACACTGTCATTGACATTAAGGAAAGGGAACTTTAGCTGCCTCACACTGAGTTAGGTGCAAGTAAGTGGACCTTGTCATTATCGCCCAGACAAACGCCAACAGAGGCTTTGATATTTAGCGTGTTCTCCTGGAACCCTGATGGTTCCTACTTTGAAAGAAGCATATGTAGTTCAAGCTTTGGATCAAATAAGAGGGGCTCAGAGGCTCCGGGCCAGACAAAGCCTTATAAACCTTTATAAGGTCGTGCATGTCCTACCCTGTATTCCCTGAAGCCAGAAGATGACAGGATGTTTCATAATTCTGAGACTAGGAGCTAATCAGTTAGCCAGACTTGCCTTTGAGTGGGGAGGGAACATGGAGTGATCTTGTTCTCTGCCGCCCTGTTGAAATTCTGAAGAGCATCTTGGCAGCCACCTTTAGTATGTCTGCGGAAAGGTCTTGTGGGAGGGAAATAACCCAATTGTGGCTTTTGAGGAATTCGGCTGACATGGAGACTGGTGAGGAATGGGACTGGACCACCTTCATGGACAGGTTTTGGCAGGGCACCAGAGGATGCGACTGTGTGCATGGGGATGTATCTGAACGCGCTTCTCAGAGGGAAGAGTCAAGCTGTAGAAGATGACAGCCCTGGGAGGCAGGTTACTGGTGAGGCTTGCTGGGAAGTTTTTGGCCGCACAGAGCATCAGAGTGTGTTTCTGATTCCTAG
Seq C2 exon
ATCGTCGTGGGAGATAAAGTCGTTCTGATGCCTGTAAATGCTGGGCAGCCCCTGCATGCCAGCAACGTGGAGCTCCTGGACAACCCCGGCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804:ENSRNOT00000040645:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(29.7=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]