GgaINT0122224 @ galGal3
Intron Retention
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:70038410-70044416:-
Coord C1 exon
chr1:70044258-70044416
Coord A exon
chr1:70038509-70044257
Coord C2 exon
chr1:70038410-70038508
Length
5749 bp
Sequences
Splice sites
5' ss Seq
AATGTACGT
5' ss Score
6.58
3' ss Seq
ATTTTCCTTCTGACTTCCAGGTT
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTACTGCACATAAAAAGTAACAAGTACCTCACAGTTAATAAGAGATTACCAGCTCTGCTAGAGAAGAATGCTATGCGAGTGTCTTTGGATGCTGCAGGGAATGAGGGATCATGGTTTTATATACAACCATTCTGGAAACTAAGGAGCGAAGGTGACAAT
Seq A exon
GTACGTGGAAATACTGAATGTGTAAGAGGGAGAAAGCAGAACATTCCCAAGAGATACATGATTTCTTTGCAACTGGCATAAAGTGTTCAGAAAAATAAAAAATTAAAACAGTGCTTTCAACTGTTAGCATCAAATTATATGGTTAGGAATCTGAAATGTTGCCTCATTCATCCGAGCCTCTGCTTAGCTGCACTGGGACGTTTTCCATAGACAATCTATTATATGCTGGTTTACGTTAGAAGAAAAGTGTTTTTATTTGTTTATTATTTATTTATTTTTAAGAGCCTTTAGAGTCTATTTAAACTCAAATTCTTGACAGAATTCTGTGAAAAAGCCAGCAGGGGGTGTCTCTTGAAAATACACATGTGACTTGAAATGTATATCCCCTCTCAACACAAGAGTGGCTTCTGTGACTGATATTGGGTTTGACGGTCTGGTGGGTATTTTCTGGGTAAATATTAGTGGGATACTGCGTATTGGTAAGAGGAAGAATACATAGGAGAGTTCTTTGCTGCTGGCCTGAGATCCGTACCTTGAGGCCAGAACTCTGTTCTTCATTCAGTCAGCTGTGGCCTGACTAAGTGTCCACTGTGGAAAATTCAGATCCACCTCTGAGAAGGCTGCGTAATAGACTTGTATGGTTCTATTTTATGGACCTGGCTGGAAATGTTTGCCCACTCTCCCTTGTGAAAGAGCTTCTACAGGCTTTTTGCACAGACAGGAGTGCTGCTTTTCTCATGTATTTTAGCTCATTAACTTTGTAGTTATCAGGCTCTTGGGATGCTATCCAGGATGAGGGTGGTTGCTTGCAGTTCTTTTAGGCAGTATATTATGGGGAGGGGAAGGATTGTGTCCGCAGGTCATGATCAGAAGCCACTAAAGTCATAGTCTTTCTATGTTATATATTCAAGAGAAAAGGAGCAGGCATTGGTAATCCTGCGGGGCATCTCTCCATGGTTTTTCAGCTGGGCAAAAAAAGTGTTGTGGATCAAACCTTAAGCTGATATTCCTTTCCTTCTTAAAGAAGAAAAAAGTAACTTATTGTTTTAAGGTTTTTGGCTTAATTTCTTAGAATAACATTAATTCATCATCTTCTTAATTTCTCGTGTCTGGGAAGTAAATGTGAATTGCTTTCCATAGTGAAGACCCAGCGTTCCTATAGCGTGATCTGCAAAGCGATTGTGAGCCCTTACACATACAACAGAATTCTCTTAAGCCTTAAAAGTCACCCTGATTGTTGTAGAGTTTTTGATTTGTACTGACACAGTTGTGGGCACATGAGAAATGTGAGGATTTGAAGCAATTCTGCTTTTCTGGGAACTGAGTCTATCGCTACAGTGATCACTGTGGCAGCACATTCCACTGATGGATCTCTGCAGATCTCCTTCCTGCTGTTTCCTGTGGGTATTTGTCAAAGTCTGTACTAAAAACGTGGTGTGGGAAATTGTCAGGTTTTCTCATACATTAATGGTCTTTTTTGGACCTGCCTGCTGCTTGTTTTCTGTCACTAGGAATTGTTCTCTTTCTGAGCTGTGAGCTCTCCATTATATTTTACAGAAGGAAGTCCCAAAACCCACGTTTTTCCTCCTTCTTCTAGGCATAATTAGATGTTGATAGTTTTCTTTGCAAAATTCCAGCGCTAAACACCAGTCCTTTGGTAGCTTTCTCAAAAATAGTCTGGAATGTTTCTACCTTTTCAACAGACACAGAAACCAAGCGGCTGCTGTTAAGAGGGGCAGGAATAGCAAGTGATGTGGGAAATCCCTTATTTGCTTGTCATGGAGTGAGAGAGGCTTCACCCTTCCAACAGCTCCTTCCCTCTCAGGTGCTCACAGAGCAGCTGATACCGCATAAGCTGGGGGCACGTTATCCCCCCACTAGGTTATCTTTTAATATATGTAGATAATTTGTTTTATGACTTTCTTCTTCTGACCTCTCAGTGCATGAAGTTAGGTTGATGGTATCAGGTCCTTACTCTGTTTAGAAACTTCTGTATTTGTTTCTTTTGCATTGTTGTTTTTTTTCTTTTTCTTGTTTCCTTTTTCCTCCTGCTTTCAGTTTCTGTGCTATATAAAAAGGAAATTCCCTAAGAAAACATACTACAGAAGGTCTTTACAGAATCTGTCTCTAAAATAGTATAAGCGTATGTAGACTTTCTGCTTGAGTGACTGCTACTGTGTGAGATAGCACAGGCAAAGGAGCTCCAAATATACCCTAAAAGAAAAGAAGATCATCTTTAGGGGGGAAGTTATGATATAGGAAGTCATGTGTGTAAGTTTTCTGGTAAGTCATTGTGGTTATTTAGCTTTGTGAAGTATTTTAAAAATAATTTTTCTGAAGAGGGTTTAGTGTAGCTTCCAAAGCAATTGATTCATTATGTGAGTAATGAAAAAATATTGCCAAAAATTTACAGTAATTGGCATAACTCGGCAATATTTTTTGCATTTCAGCTCTCCTTCAATAACAGATTAAGATTTGACTGATTAAGGCCAGGGCTGGTTCCAGTTGTACTGAAAAGCAAGATTTGCAGTGATAGCAGGATTAGCTCTGCATGGGTTGCATTTTTGATTGTCTGCCATTTTTAGTTGATTAAAAACTTGGTAATGCAGGATGCTGAAGATGGTGGTTTTAAACTTGGGGAATGGCCACCCAGCTATGGGAAAGGTAGAATAGCTTAGGTTGGAAGGGATGTTAAAGCTCAACTTGTTCCAAACCCAAAAAATTCTACTAAATCATAGACTCAAAGAATCATAGAATGGCCTGGGTTGAAAAGGACTATAATGATCATCTAATTTCAAACCCCTTGTCACGGGCAGGGTTGTCAACCACTAGACCAGGCTGCCCAGAGCCATGTCCTCGCTGTCTTTGAAGTATGTAAGAATATGATTGGCAGGCATATGTGCTTATAACACAAAATTGATGAAAATGGAGCAGCAGAGCCTTCAGTGTGCCTGGTAAGCTATTTGGACAATTAGTCAGAACTGAAATTTCTGTTGCTGTATCTTTGCAGTTCTTCACAGCTAATACAGCTTACTGTGACAGGCAGTCTTTCTGATACATCATACCTTTACTACAGTATTTTCTCTTAATTCTTGGTTGCAGCGTAGTTGTAGCTGTTAGGTGGACTTACTGAGTTTATATGCAATCAAAGAGTTGCTCTAGGAGATGTCAACCCTGATCCTCCACCTACAAGACTATGCAGTGGATTTTGATTGTGGCTCTTCCCACAATCAGTGTTACCTCTCCACCTAGTCACAGACAAATAGGGTTGCATAAATTTAGAATTCTGCTGCATCCAAGACTCAAGGACATCATAGGTTTATTTTACATTCAAAAGCTGAATTCTCATGGCTTCAGTATGAATTTCATCGTTCTCTGGAAGCTTATTATCTAGGCCAGAAAGAATAAGAGTTTTGTCAAAGGAACTTGGAATTAGATCCTCAAAAGCTATGTGTCATATGCAGATTTCATTTGTGTGTGTGAGGAAAGAGTCTCTGTGATCTGTCAAACTATTTGCTGACAACTGATTTGCAGCACACTGTGGCTGGCTGTGCTCATCTGTACCTAGGGAAAAGAAGACTGCTGTTAATTCTAAGTTTGCAGAGGAAAAACTTGGGAATGCACTGCTTTCTCTTCTATAATCTCTGCACTGAACAATTCTGCAGACATAATTATGGGCCTATGGGCATGTGTGTACCTGAATAGGTAGTGCCTCCATACAGGAGCATTATTTGGAGCCAGAAATGAACTGGGTGGGAGATGTAGGCACGGGCAGGGAATAGGAGGAATTCAAAAGAGCAGAATTGCAGCTTGCCAGAAGCCACCATATGTAAGAAAACAGGATTCTCTCTTTGCTTTCATGTTCTGTATCACTGGTGGAGAATGTATAGGGAACAAGCACTGTTAAGTTACCTCTGTACCTTCCTTCCCAGCCTTTCATGGACACTCAAAGCAAGTTAAAAAAGGAGGTAGAAGAACGTAGGCTATCTCATTGCTTCTGTGGCAACAGATGTAGCTGGCCAGCACCAAGGGCAATTACTGATATCGACTTGGAGCAGGGTAGAAGACTGAGACAGAAACCATGACCCCATGTAATGGTTCCTTCTCAGGTGTGTGTCTAGAGCAGAGTAGCTGTGTACTTCTTTCCTCTGGTTGCCTCCATGAAAATCACAGAATGCATTCTAAGATACCTTCGTCCTGATGCCTTCTTGATTTTTATTTTTTTTTTGAATGGGATGCTCAATGATGTGTTCTCTCGTTGTTATAGTCCAGGTGTACTTTCAATAATTTTGAAGTCCTGATTCCACTTTGCAGGTTGCAAGCCTGATGGTTTTTTGATTAATGAATTGTCTGGTCTTAACTTCTTAAAATGGTCTGTAAGTAATGACTGTGTGAAGCATGGCATGCAGAAATGTATTGCATAAGTGAGGTACTGTAAAGGCACCTTGTCACCATTATTTGGTTCTGTCGGTGGACTTTTTCTCATTACTTGGGTCAAACAGGATTGTTACCTGTAGTCTGAGCATGATGACGCTGTCTTTTGCTACTCTTCATTTTAGCTGTGTTGATAAAAAAAACAAGCAACCTTCTTTTTCACCTCTGCAATAAGTGGGCCAAATTCATCTGCACTGAAGTTATACAGGGCTGAATCAGGCTCCTCTTGTAAGAAATGTGCTGATCAATGCAGAACACATTTTTGTTTGTATTCCTAAAAAGCATGGCTTTTTTTCAAGCTTTTACAGCTTTTCATATATCAAAATCACCTTTAGCCACTTCTTGTCTTCGTGTGTGTGTGCTTAAAATTGCTGGGAACAACATAAACAAGCCAGAATACCAGTGCTACTCAATTTCTGTGTATTGATTTTTTGCCCTTCTCAGGTATGAACTGAATTCTCCATGTGCACGTTTCAAGCACTTTTTAGGTCAGAGACAATTTCATATATTATTGCTCCCTGTCTATATCATTAAAGAATTCCAAGGACGCAGGACTTTGCTTGCAAGGAGTCAGCTAGGAATTTGTCTTGTAGAGAGAAGATCGCTTAGCTGATGTACCTGGTGCCTGTGCTGAGCATCAAACGTCATTTAGGGAGTAACAGGAAAGGGGATAGAGTGAGTTCACCTCTCTGAATTTCAAGTTGTTCATGTTCCTTCCCAGGCTGCAGTCATACAGTCTGAATTAGAGAACTCATGAGCCTGTCCTGATGTTTGCCAGAAGATGGCATTACAGAGTGAGGAGTCACTGGGCTAAAAAGTCTTGTCACAGACAAATTTTTAAGGCTTCTCTGAAATGACAGACATTGATGGAATAGGCTGTCTTACAGCAATAGAGGGAAAACAATTCCGCTGTCTGATTACAGATTATTTTCTAAGCTTTCTCTGCCTTATGACTGGCAGTAAATATGGGATAAAGAGTACCTAATGTCAATTGTAGATTTTCTGATCTGCTACTGAAATTCATAGGTTCATATCTCTTATTTCCTGGACTTGAGTTTCTGCTGAACTGAGTGACGTACTTACTGAGAATGTGAGGACTCATTAGTGTCATGTCTTGAACCCGAGCAATTGCAGAGGCACATGAGAACAGAACTGGCCAAAAAAATATTCTATTGGCGTGTGAATTGTGTGCAAATAAATTCACTAAGTGCTATTTCTAGAGCATGCATTTGAGTCATTTTTGAAAAATACAGCATTATTTCATTTTATTGGGTAATTACATAGGTCTAAATTACATTTTCCTTCTGACTTCCAG
Seq C2 exon
GTTGTTGTTGGAGATAAAGTTGTACTGATGCCAGTCAATGCAGGGCAGCCACTGCATGCTAGCAACATTGAACTTCTAGATAACCCTGGCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071:ENSGALT00000022784:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]