DreINT0083717 @ danRer10
Intron Retention
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:15989955-15991411:+
Coord C1 exon
chr18:15989955-15990113
Coord A exon
chr18:15990114-15991312
Coord C2 exon
chr18:15991313-15991411
Length
1199 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGC
5' ss Score
6.12
3' ss Seq
TTTGTGTTGTGTGTTTGTAGGTA
3' ss Score
10.1
Exon sequences
Seq C1 exon
CTTCTCCATATTAAGAGTAATAAGTATTTGACGGTGAACAAGCGTCTGCCGGCGCTGCTAGAGAAGAATGCTATGCGTGTATCTCTGGACCCTTCGGGAAACGAGGGCTCTTGGTTCTACATCCAACCTTTCTGGAAGCTGCGCAGTGAAGGAGACAAT
Seq A exon
GTAAGCATCTCCAGAAACATACACTCTGTTCTGTAAAAAGATCTGTAAATTTGCAGTTTTTTGTGTTTTTGTAATGTTTTTATTTATTTTTCTCATTTATTTATGCTTTTGAATTACGTTATGGGACCTTGATCCCATATGGGATCTTGACCAATTGTCCAACAACTTTTAACCTTGGAATGTTCTGAACATATTTATTAGTTTAATTGTTTATGAACATTTTTAATAGTTAAAGTGATATTGTCTGGGTTGGTGTTGAATAATATGGTACAAAACCTTGTAATAAACTGCCAGTACATTTTCTGGTATTGAGCAGATTTATTTCTCTATATATTATTTCTTATGCATTTATATTATTGCAAACTACTAAAATGCCAATAAAAGTCACTTTGTTAAACTGTAGAGTTGAATTTTAAACATCAAAAGTCGACAGAGCAAAGATCAAGATCCCATAATGGAATCCACAAACTTAAATAAATGGAAATACTTGGGAATTACAAAATATGGAAACTGTTAATGAACAGATATCTTTTCATTATCTTAACAGATATCTTTTCACACTGATGTCAGATATCAGTGTGCAGTGATGAAACTATGTGCCCTGCAGTGACTTATGGGTCATTTTTTAATGTATATTCAAAGCTAAATGCCTCTAATCTTGAAATTAACCTCTTATTGTGTTAACTCATGATCTCTCCTCTTGTTTTCATCTCAGCAACTGAATCATAAAGGTATATAATCAGTTTGGAGCATGCAGTGTGTGTGAATATATGTGTGTACACAGTAGTATGTGGCACGCTTGCATGCATGTACAGAGCTGCCTTTTACAGAACACATTTACATAACTTTCAAGCAAGAGAATGTTTTTTTTCATATTAAATCTTATTTGATCTACTATGCAAATGTATTCAAATAAGAACATAATTATTGAGGATAGCTTAGAAACAGGTTCACATGAAGTGATGTTTTGAGATCTAAGCACTTAACAACACTTTTTCACACACTCTTTTGCTGTGCGTTTACACTACCACTTTCAGCATGCAGCGGTTATTATTTTCGTATGTGTATAAGCTAGTTTTGTAGTCTGTTGAATAATAATTATAGACTTTAATGGTACAGGATGTTATGTCATTTTTCCTTTAATGTTGAAATGCCTTGGCGACAGAGTAGTTGATGGTGTTTGTGTTGTGTGTTTGTAG
Seq C2 exon
GTAGTGGTTGGAGATAAAGTGGTCCTCATGCCTGTAAATGCAGGACAGCCTCTCCATGCCAGCAACATTGAACTCCTGGACAACAGAGGCTGCAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909:ENSDART00000061134:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(23.0=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAAGTATTTGACGGTGAACAAGC
R:
TCTTTGCAGCCTCTGTTGTCC
Band lengths:
238-1437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]