DreINT0083718 @ danRer10
Intron Retention
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:15991313-15994347:+
Coord C1 exon
chr18:15991313-15991411
Coord A exon
chr18:15991412-15994263
Coord C2 exon
chr18:15994264-15994347
Length
2852 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
CAGATGTGTGTCTCATTCAGGTA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTAGTGGTTGGAGATAAAGTGGTCCTCATGCCTGTAAATGCAGGACAGCCTCTCCATGCCAGCAACATTGAACTCCTGGACAACAGAGGCTGCAAAGAG
Seq A exon
GTCAGAAAGCAGCTCTGTTAAACTTCAGAAGAGTTGAGAAAGCTAGATTAGTATCCTTGATTTTTCACATACTGTAAAATAAACGTGTGTGTTTTTAATCCCCGCAGAATGTAAATGACAAGATTTTAAAAATTTTTTGGCAGTTTTTTTTTATTTCAAATATTGTATATACTTAATCAGACCTTATATATAATAAAACCAGGGAATCCAGAGAAATTAAGAATTTAATTCCCATGTAGATTTTTGTTGCTATATATATGAGCAATATCACACTGGTAGCAGTGCAATATGGCTGTATATCGGCACTGGTGGGAGGCGTGCGTTGTGCCTTAGTGTCCCACCAGTGCCAATATACAGCCATATTGCACTGCTACCAGTGTGATATTGTGTTTATACAACAGTTCAACAGCATAATCATGTATGTATAAAAGAAAATCAAACACTGAGAGTCTCAAAATTCTTTTGTATGAGGAACTACGCCATTCATTCACATCTGCAGCTGACATCAGAACAACAGAAACCATATCCAATTCACCAATGTCATTTTACAGCTAGTGTTTGAATGATTCTATAGCATAATGTCTAAAGTGATGACAAAACAGGTAATTTTGCTCACATTCTAAAATCATTTGGAGAACTGTAATGTGGGCAGAGAAATAAACAAGGGTGAGGAGGCTGTACGAGTGCTGTTATTACGGGAATATCACATGGCCAATCAGATTCGAGAACCAGACAGAACTGCTGTATACAGTATATACATACAACAGTTCTTTCTGGTTCTCGAATCTGATTGGCTAACTGCTGTGTGATTTTCTGCAATAACAGCACTCATACAGCCTTTTATGTTTGTGTATTACTCTGCCCACATTACAGTTACACGCAGAGGTGGAATAAAATCACTAAAGTTTGACAAATATTGCTGCTGTTGGACAACATTAAGTACCTTTGAGGCTTTTTAGTCGAGAATGTAGTTGTTTAGATTGCAACTAGGCAGTTTATTTATAAGGTTAGTGCCTATTTTAAATATTCATAATTTCAGAGATTTAGCGCATCAGCAGAGACTGCAAAATAAGTTGTTTGAGGGAGAAAAACTCGGCGTTTTCTTTTTCTAACTACAGCTGATTGAATCATTATAAAAAAGGCTAAGTGACATTCTAAGTTGATCTCTCTTTTTGTATTTTGTACTGCTGTTTTTATACCACAGCAATCTGGTAGTGTTTGCTTCGCTTTGGAGAAATACTGGGAAATCTCTGTAGACTGATGGCATTTCATGCCGCTCAGCCTTAATAATCTTAACATGTCAGCAAAAACACCAGTTTTGTCATCACTTTAGACAGTACTCAAAGTCAAACACTAGTTCTAAAGTGACATTTGTGAATGACAATGGTTTCTGCTGTTCTGACGTCAGCTGCAGATGTGAATAACTGGCGGAAAAACCTAGTTCCTCGTATAAAAGAATTTTTGAGACAACATGTTTGATTTTCATTTTTATACACACGTTTATGCCGTCAAACTGTTGTGTAAACGCAACATCACACTTGTAGCAGTGCGATATGGCTGTATATCATCACTGGTGAGGCAATAAGGCACTCTGGCTGCTGCCTCAAGCCAATGACACTAGGGTTGGGCCAATAGACGATGCCATCGTCCATCGCCGATGGCCAATAGACAGCACGATGCTGAGCTTGCATCGCAGATGCTCCGCCCTGCCCCCGTCGCAAACCCGCTCGCGAAAAATACACAATCAGGCCCCGTTTACACTAATACGTCTTAGTGTTAAAATGGCATTTTAGAAAGCAAATGATCCACATCCACACCGTATTTTGCCTAGCATTTCTGAACAGCCCTCCGTCCGCTGAAAATGCACATCACGTGACCACACACACACAGACACAAGTGGTGCTCATTGCAGAGCCACACACACACACACACAGCCACACGCTTCTATCTCAGAGCTCCAGAGACAGAGATATTCAGACATTCAAGTCTCCCGTAAGTTCCGGGAGTCTCTATGCATTTGCTGGAGTCATAATGCCTGCAAACGAGTGATAATTTCCCGGAAATCGCACGTCTCCCTCCCGGTCCTCAAATAAGTCATGCACCCATCTTACCCCCGGATTCCTCCTCGCTCTTCAGACACGTCACGCGCAGTCTATCAAACCCGAAATTAATTAATTAATTAATTTATTATTATTATTATTATTATTATTATTATTTGTAGTATTATTATTTGTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTATGGATTATAATATATAATTGTAAAATTGTTTAAACATGTATTTTTATTTGGAATAAAAGATAGCCTTTGGTTAGTTCTGGCACATTTATAGAAATGTTTTATTAATATGCAATTTCCCTGTTAACTAAACAATAAAAATAACAAGAATATATAGGATAATATAGGCAATTTCGAGGGATGTAAACAAAAACAATGGCCCAGCATATTTCCTGTTTTACAATTTAAAATTTTATAGCTTCCAAGAATCCAAAAAGAACCACAAATTGATAAATAATGTTATGATAGCTGCTTTAACATTAAGCTATGATAGAATTGTCTCTGGTTACAGTTATATAATGGTTTGATAACAAGCAGGAAATGTTTATGGGCCAATGACATGACCACATTGAAATGGTCTATAACCATAATAATAAATAAATACAATCACAGGTGTATCTCAATAATACTAAAATCAATGTGAGGAAAAAATAAGAAAATGAATAAATTAAATAAAGAAACTACATATAACTGGAAAAGAGATTAAATTTACTGGAAATTTAATTCAGATGTGTGTCTCATTCAG
Seq C2 exon
GTAAATGCTTTGAACTGCAATACTAGCTGGAAGGTGACGCTCTTCATGAAGTTCAGTGAATACAGAGATGATATTTTAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909:ENSDART00000061134:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(14.2=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.1=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]