BtaINT0078593 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7746421-7747127:+
Coord C1 exon
chr23:7746421-7746605
Coord A exon
chr23:7746606-7746926
Coord C2 exon
chr23:7746927-7747127
Length
321 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
TCCCTCTCCATGCTCTGCAGAAC
3' ss Score
8.92
Exon sequences
Seq C1 exon
GCCGCGTGGCCTCCTTCTCGATGCCCAGCTCCTCATCCCGCTATGCGTTGGGCCCCAGCCTGCGCCGGGGGCACGAGGTGGGCGAACGCGTGCAGAGCAACGAGATGGGCACGTCCGTGCTCATCATGCAGCCCATACTGCGCTTTCTGCAGCTGCTGTGTGAGAACCACAACCGGGACCTGCAG
Seq A exon
GTGTGGCCCCGCCCCGCCCCGCCACTCCCTGCCCCAGGCCCCGCCCTTCCCCGAGCCCCACCTCCCTGCGCCCCACTCCGCCCCCGCTCCGCCCCAGGTACCCATCCCCTCCCCTCCCTGCGCCCTGCCCTTCCCTGTACCCTGCCCCTCCTCCCGAAACATGCCCATACTCTGCGCCTGGTGTCAGGCCTGGCTACCACGGCGTGTGGCTCCAAGGCCGGCGAGGCCCCCATCCCTGCCGCCGGCGTGATCGTGGTCCCCAGGCAGGCCTTCCCTCCGTGCTGCAGCGGCGCCATGCACGTCCCTCTCCATGCTCTGCAG
Seq C2 exon
AACTTCCTGCGCTGCCAGAACAATAAGACAAACTACAACCTGGTGTGCGAGACGCTGCAGTTCCTGGACATCATGTGCGGCAGCACTACGGGCGGCCTGGGGCTGCTGGGGCTCTACATCAATGAGGACAACGTGGGCCTCGTCATCCAGACCCTGGAGACCCTCACCGAGTACTGTCAGGGTCCCTGCCACGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.2=46.8)
A:
NA
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTCCTCATCCCGCTAT
R:
ACCCTGACAGTACTCGGTGAG
Band lengths:
344-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]