GgaINT0141542 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4570778-4571505:-
Coord C1 exon
chr26:4571321-4571505
Coord A exon
chr26:4570979-4571320
Coord C2 exon
chr26:4570778-4570978
Length
342 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CTGCAGGCTTTGCACAACAGAAC
3' ss Score
1.73
Exon sequences
Seq C1 exon
GACGAGGAGAGACCTTCATGATGCCCGGCACCCCCTCCCGATACCCGCTGGCCTTGGGGTTTCGGAAGGGCCATGATACCGGGGAGCAGGGGCAGAACAATGAGATGGGGGTGACGGTCCTGATTATGGAGCCCATCCTGCGATTCCTCCAACTGCTGTGTGAGAACCACAACCGAGACCTTCAG
Seq A exon
GTTGGTGCTGGGGGCTGCTGGGGGCTGCGGCAGAAGCCATAGGGCTGGAATGTGGGATGGATGGGTTCTGCCTCCACTGAGTCCAAACAGGCATTGCACTGGCCACTCTGTGCCTCAGCTTCCTATGGATATAACCACCACTCTCTATGGATATAACTTTGCTCGGTATTCTGGAAGGAGCCAATCAGGGCACTCCTGTGTCCATGGGAGCAGGTGCTGCTCTTGAGGAGTCTGCACACACTATGGGGATGGCCCTGGGCTCGATTCTCCTTCTCTGGAGGAGATGCTGGGAGTGGGGTCAGGACCTGTTTCAGGCTCGTAACTGCAGGCTTTGCACAACAG
Seq C2 exon
AACTTCCTGCGGTGCCAAAACAACAAGACCAACTACAACCTGGTGTGTGAGACGCTGCAGTTCCTTGACATCATGTGTGGCAGCACCACGGGCGGGCTGGGGCTGCTGGGCCTCTACATCAATGAGTACAACGTGGCCCTCATCACGCAGACCCTGGAGACCCTGACCGAGTACTGCCAAGGGCCCTGCCATGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.8=48.4)
A:
NA
C2:
PF084546=RIH_assoc=FE(54.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACCTTCATGATGCCCG
R:
GTACTCGGTCAGGGTCTCCAG
Band lengths:
353-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]