HsaINT0083328 @ hg19
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33653420-33654030:+
Coord C1 exon
chr6:33653420-33653604
Coord A exon
chr6:33653605-33653829
Coord C2 exon
chr6:33653830-33654030
Length
225 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AACCCTTCTGTGCCCCGCAGAAC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GCCGCGTGGCCTCCTTCTCGATACCTGGCTCCTCATCCCGCTACTCGCTGGGCCCCAGCCTGCGCCGGGGGCACGAGGTGAGCGAACGTGTGCAGAGCAGTGAGATGGGCACATCCGTGCTCATCATGCAGCCCATCCTGCGCTTTCTGCAGCTGCTGTGTGAGAACCACAACCGGGACCTGCAG
Seq A exon
GTGAGTGCCTCGCCACACACCTGCCCCTTCCCCCGCTGGCCAGCCGGCATGCAGACTAGGCAGTGTGGCTGGTGTCCCTCTATGGCAGGTGTGCCCTGCCCTGGGCACTGCTGCTTTGTGGCTGGTGGTTCCCCTACCCCTGCAGCACACAAGATCGTGCTTCCCAGGCCAGCCTCCCTCTCCGTGCTGTAGCTGTGCTGTGCCCAACCCTTCTGTGCCCCGCAG
Seq C2 exon
AACTTCCTGCGCTGTCAGAACAACAAAACCAACTACAACTTGGTATGCGAGACGCTGCAGTTCCTGGACATCATGTGCGGCAGCACCACGGGCGGCCTGGGGCTGCTGGGGCTCTACATCAATGAGGACAACGTGGGCCTCGTCATCCAGACCTTGGAGACCCTCACTGAGTACTGCCAGGGCCCCTGCCATGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-ITPR3:NM_002224:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.2=46.8)
A:
NA
C2:
PF084546=RIH_assoc=FE(55.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATACCTGGCTCCTCATCC
R:
GCCCACGTTGTCCTCATTGAT
Band lengths:
306-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)