MmuINT0084569 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27250689-27251225:+
Coord C1 exon
chr17:27250689-27250870
Coord A exon
chr17:27250871-27251024
Coord C2 exon
chr17:27251025-27251225
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
ACCCCACCTGTGCTCCACAGAAC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCCGCGTGTCCTCCTTCTCCATGCCCAGCTCCTCCCGCTATTTGCTGGGCCTCGGCTTGCACCGAGGGCACGACATGAGCGAGCGGGCGCAGAACAACGAGATGGGGACCTCGGTGCTGATCATGCGGCCCATCCTGCGCTTCCTGCAGCTGCTGTGTGAGAACCACAACCGTGACCTGCAA
Seq A exon
GTGAGCGCCTTGCTCGTCCCTGCCTGTCCGCTGCCGCATCTGATCAGCTGGCATCCCTGACTGTCACTGGGCAGGGCCGGCTGCTGGGACTGGTGTCCTTCTCCTGGTGGGTGTGACTGTGCTCCGTTTCACCCACCCCACCTGTGCTCCACAG
Seq C2 exon
AACTTCCTGCGCTGTCAGAACAACAAGACCAACTACAACCTGGTGTGTGAGACCCTGCAGTTCCTGGACATCATGTGTGGCAGCACCACAGGGGGCCTGGGGCTGCTGGGGCTCTACATCAACGAGGACAACGTGGGCCTGGTCATCCAGACCTTGGAGACCCTCACAGAGTACTGCCAGGGCCCATGTCATGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.8=49.2)
A:
NA
C2:
PF084546=RIH_assoc=FE(54.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCGGTGCTGATCATGC
R:
TGTGAGGGTCTCCAAGGTCTG
Band lengths:
244-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: