RnoINT0076762 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5703526-5704050:+
Coord C1 exon
chr20:5703526-5703707
Coord A exon
chr20:5703708-5703849
Coord C2 exon
chr20:5703850-5704050
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCCCGCCTGTGCTCCGCAGAAC
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTCGCGTGTCCTCCTTCTCCATGCCCAGCTCCTCCCGATATTCGCTGGGCCCTGGCTTGCACCGGGGGCACGACGTGAGCGAGCGTGCGCAGAACAACGAGATGGGGACCTCGGTGCTCATCATGCGGCCCATCCTGCGCTTCCTGCAGCTGCTGTGTGAGAACCATAACCGGGACCTGCAG
Seq A exon
GTGAGTGCCTTGCCCGTTCCTGCCTGTCCGCCCCTCTGCATCCCGGACTGCTACTGGGCACGGCTTGCTGGGACTGGTGTCTTCCGCCTCGCGGGTGTGACCGTGCTGTGTGTGCCACACCCACCCCGCCTGTGCTCCGCAG
Seq C2 exon
AACTTCCTGCGCTGTCAGAACAACAAGACCAACTACAACCTCGTGTGTGAGACCCTGCAGTTCCTGGACATCATGTGTGGCAGCACCACAGGGGGCCTGGGGCTGCTGGGGCTCTACATCAACGAGGACAATGTGGGCCTGGTCATCCAGACCTTGGAGACCCTCACAGAGTACTGCCAGGGCCCGTGCCATGAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.393 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PU(24.8=49.2)
A:
NA
C2:
PF084546=RIH_assoc=FE(54.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTCGGTGCTCATCATGC
R:
TGTGAGGGTCTCCAAGGTCTG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]