BtaINT0078595 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7747273-7747909:+
Coord C1 exon
chr23:7747273-7747383
Coord A exon
chr23:7747384-7747813
Coord C2 exon
chr23:7747814-7747909
Length
430 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GGCCTGTCTTCCCACCCCAGGAC
3' ss Score
8.98
Exon sequences
Seq C1 exon
ACCTGCATCGTGACGCACGAGTCCAACGGCATAGACATCATCACCGCGCTGATTCTCAATGACATCAGCCCCCTATGCAAGTACCGTATGGACCTGGTGCTGCAACTCAAG
Seq A exon
GTGGGGCCCGGGGCAGCCCATGTGAGCACGAGTAGGTGTGCGTGCTGGTGTGTGTGATGTTAGCTTTCTGTATGTGTGCCGTGTGGATATCATGTGTGTAAGCATGGGTGACGTGCAGGTGTGTGATGTATGCATGTTTATTGTGCACACGAGTGCACGTGTGAGCAGATGTGCTGGATGTACACTTGCTCTAGAAGCGGACATGCTCTGGATTTATCCGAGGGCCTCCGTATCCATGTCTGCTGTATGGGCGTGGGTGTGCTTGCCACAGTGGGGGAAGGTGGACTGGATACACAGCACCCTTCTCAGCAAGCCCTGGGAGTCAGTGGGGTACAAGAAGGCCATGAGACTTGTGGGCAAAGAGACTGTTATAGAATAGTCAGTGAAGGGGTTGGGGGCCCTCAAACTGTGGCCTGTCTTCCCACCCCAG
Seq C2 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGGCACGACAGTGAAAACGCCGAGCGCATCCTCATCAGCCTGCGGCCCCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCATCGTGACGCAC
R:
GGCTGATGAGGATGCGCTC
Band lengths:
190-620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]