GgaINT0141544 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4449067-4449542:-
Coord C1 exon
chr26:4449432-4449542
Coord A exon
chr26:4449163-4449431
Coord C2 exon
chr26:4449067-4449162
Length
269 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CAAGGACTTCTCCCTACCAGGAC
3' ss Score
5.99
Exon sequences
Seq C1 exon
AGCTGCATCGTGACCCACGAGTCCAACGGGATCGACATCATCACAGCCCTCATCCTCAATGACATCAGCCCCCTCTGCAAGTACCGGATGGACCTGGTCCTGCAGCTGAAG
Seq A exon
GTGGGCAGAGCCCAGGACTGGGTTGTGTGGCACGTGTGTGAGCTCCCTGTTTGCTGGGCTGAGCTGTGGGGTGAGACGGGCACTGGGCGTGCATCAGGTCTTACATACATGAGCTGGGACGGGGCTGGTGCATTTCCACCACAGAAGGTTTGGATGCCTTTAGCACAGGGGCATTTATGACTGACTGTGATGCAGGGGATTTCTGCCCACCCTGAGGTCCTGGGCAGAGCAATGTATAGCTCCTCTCAGCAAGGACTTCTCCCTACCAG
Seq C2 exon
GACAACGCCTCCAAACTCCTCTTGGCCCTCATGGAGAGCAGACACGACAGTGAGAACGCCGAGCGGATCCTCATCAGCCTCCGCCCACAGGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.2=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCATCGTGACCCAC
R:
AGTTCCTGTGGGCGGAGG
Band lengths:
206-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]