DreINT0083748 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21298100-21298377:+
Coord C1 exon
chr8:21298100-21298210
Coord A exon
chr8:21298211-21298281
Coord C2 exon
chr8:21298282-21298377
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACAAACATGAATGTTATCAGGAC
3' ss Score
2.6
Exon sequences
Seq C1 exon
ACATGCATTGTCTCCCATGAGTGCAACGGTATTGACATCATCACAGCTTTAATTCTGAATGACATCAGTCCTTTATGTCGATATCGCATGGAACTGGTGCTTCAGCTCAAG
Seq A exon
GTGAGGATAAAGTCAAAGCTTTATTTTAATAATTGATAATGACTTAATGTAACAAACATGAATGTTATCAG
Seq C2 exon
GACAATGCCTCTAAGCTTCTTCTGGCTCTGATGGAGAGCCGTCATGACAGTGAGAATGCAGAGAGGATCCTGTTTAATCTTCGACCCAGAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGTCTCCCATGAGTGCA
R:
TGCATTCTCACTGTCATGACGG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]