MmuINT0084571 @ mm10
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27114395-27114942:+
Coord C1 exon
chr17:27114395-27114505
Coord A exon
chr17:27114506-27114846
Coord C2 exon
chr17:27114847-27114942
Length
341 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
GCATCCCCTCCTACCCCCAGGAC
3' ss Score
9.5
Exon sequences
Seq C1 exon
ACCTGCATTGTGACTCACGAATCCAACGGCATCGACATCATCACGGCGCTGATCCTCAATGACATCAGCCCGCTTTGCAAGTACCGCATGGACCTGGTGCTGCAGCTCAAG
Seq A exon
GTGGGGAGCCTGTGAGATGTGCGTGAGTGACAAGGGTACTTGGCGTGTGTGCCGCCATGTTGTGCTGTCCTCGATGGTGCCTCTTCTGCACGTGTGCATTTGGTGAGGTGTGCAGGTTGCACTGGCTATGTAGGTGTATGGGTGTGAAGACGTCACCCTCTTCTTGTATCCCTGAGAGAACTTCCTCTGTGTGTTGGCGGGTAGCGGGCAGGGTAGGTGAGGTAGGCCTATGGGGTTAACACACCGGATGCGTCTCAGCATAGCAGAGCCGTAAGGAGGTTGGAGGGTCACATGGGGGCCCTCAGACCTGGCTTGCTTCCTGCATCCCCTCCTACCCCCAG
Seq C2 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGACATGACAGTGAGAATGCAGAGCGCATCCTCATCAGCCTTCGGCCTCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644:ENSMUST00000049308:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.2=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCATTGTGACTCACGAA
R:
CAGCTCCTGAGGCCGAAGG
Band lengths:
207-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types