HsaINT0083330 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33686409-33687104:+
Coord C1 exon
chr6:33686409-33686519
Coord A exon
chr6:33686520-33687008
Coord C2 exon
chr6:33687009-33687104
Length
489 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CCCTCTGCCCCTCCACCCAGGAC
3' ss Score
11.07
Exon sequences
Seq C1 exon
ACTTGCATTGTGACTCACGAGTCCAATGGCATAGACATCATCACCGCACTGATCCTCAATGACATCAGCCCCCTGTGCAAGTACCGCATGGATCTGGTGCTGCAGCTCAAG
Seq A exon
GTGGGGCCCAGTGGCAGGTGTGTGAGTGCTGGGTGTGCATGTGATGTGCATGCATGTATGTGTGACTTGTGTGTCAAGTGTACATAGTGGTGTGTAATGTGGGTGTTAGCATTGTGTGATGGGGCATCATCTGGATGCACAAGTGTGTGGTGTGTGCAGGGTGTGTGTGTAATATACGCATGTTTAAGCATGCTGGAACATACACTCACTCTGGATGCAAATATATTCTGGTTTAGCTGAGGACTTGCTATGTGTGTGTCTGCTGTCTGGGTAGCTGAGTGTTTGCCACAGCGGGGGTGAAGGCAAGCCTATGGGTGGGCTGGCTGTGCAGGATGCTTCTCATTAAGCCGGGGGGAGGGAGGATGGGAAGGTCATGGCACCTGACCTTTTGTTGGATGGGAGAGCTGTTATGGAGAGGAATGAGGGAGAAGTTGTCAGGGGCATGGTGTCCTGAGACTGTGGCCTGCCTCCCTCTGCCCCTCCACCCAG
Seq C2 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGGCATGACAGTGAAAATGCTGAGCGAATCCTCATCAGCCTGCGGCCCCAGGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF084546=RIH_assoc=PD(18.3=59.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGCATTGTGACTCACGAGT
R:
GGCTGATGAGGATTCGCTCAG
Band lengths:
190-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development