BtaINT0078610 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7755662-7756803:+
Coord C1 exon
chr23:7755662-7755823
Coord A exon
chr23:7755824-7756449
Coord C2 exon
chr23:7756450-7756803
Length
626 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TGGCATCTGTTTAAACCCAGATG
3' ss Score
5.19
Exon sequences
Seq C1 exon
AACAAGAACCTGGACTGGTTCCCCCGGATGCGGGCCATGTCCCTGGTGAGCAGCGAAGGGGAAGGGGAGCAGAACGAGATCCGCATCCTCCAGGACAAGCTCAGCGCCACCATGAAGCTGGTGTCCCACCTCACCGCCCAGCTCAGCGAGCTCAAGGAGCAG
Seq A exon
GTGCGCCCCCCACGTCCTGGCCCCCGCTGGCAGCCCCGGCTGTGGCTGAGGTTCCAGCCTGCCTGCCTGGGGGCGGGGAGGGTGGTGGGGCCTTTCTGCTTCCTCTGCCCCCTTCCTGCTGGTCCTCCTCTTGGGTCTGGGGTGGAAGACGGGTCCCTTGGAGAGCTGGATGGAGGAGAGACGAGGCGGCCCCTACCCCCATGCCCCGGAAGGGCAGACGGGCAGGGCTGAGTGCGACCTCGTGCACGTGTGGGGCCTCCCTCGCGCGCCCCCTCACCTCCACCCTGCAGCTGCTAGACTCTGGCCCAGGCGCTGACGGGTTAGGGTGATGGGGAAGTTAGGGCCTCCTTCCGCTTCTCAACACGCGCTGTTGCCCAGAGTGTCCTCTGCGCCATCTGGCAGTGACTAAATACGGTCAGCAGCCCCTCTTTTAGGTGGGGCGCTCTCCCAGCTGCACCAAATCAGTGGTTTGCGACACGCTAATTGAGGACCAGGGTTTGGGGCTGACGGCCCTGCTGCACCCTGGGGGTCCTTGGCCAGCTGCCAGGGCCGAACGGCAGTGGGGGCAGCAGGGAGGGTGGGCTCTGGGCGGCCTGACCCAACCGCTGGCATCTGTTTAAACCCAG
Seq C2 exon
ATGACGGAGCAGAGGAAACGCAGGCAGCGCCTGGGCTTTGTGGATGTGCAGAACTGCATGAGCCGCTGAGCCGCCGTGGCAGGCCCACTGGCCACAGGGACGCTGGAGTGCTGAGGCTGGGGAGACTGGCCACCCCTTCAGGCTGGGCGCCCGCCCAACCGCCAGAACCCACTCGGCCAGACCCCCCAGGCCAGGCTGGAGGAGAAGCTACAGAGCGGACAGCCCTGCCCAGACCAAGCCCCTAGAAGACTCAGACGCTTGACGGGACTCGCTCACCCTAGTGCCTTAAAGGAAGTCCATCCTCTCACAGGACTGTTGCTTGGTCCCTTAAAGCAGTAACTGACGTTGCTTCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGAACGAGATCCGCATC
R:
TCTTCTAGGGGCTTGGTCTGG
Band lengths:
345-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]