HsaINT0083345 @ hg19
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33662701-33664348:+
Coord C1 exon
chr6:33662701-33662862
Coord A exon
chr6:33662863-33663488
Coord C2 exon
chr6:33663489-33664348
Length
626 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGGCATCTGCTTAACCCTAGATG
3' ss Score
7.41
Exon sequences
Seq C1 exon
AACAAGAACCTGGACTGGTTCCCCCGGATGCGGGCCATGTCCCTTGTCAGCAATGAGGGCGAGGGGGAGCAGAATGAGATTCGGATTCTCCAGGACAAGCTCAACTCCACCATGAAGCTGGTGTCCCACCTCACTGCCCAGCTCAACGAGCTCAAGGAGCAG
Seq A exon
GTGTGCACCCCGCCTGATCCCAGGCCCACCCTGGGTTCTATCCCTGGGCAGTCCCTGCCTGCCTTCATCCTTCCTGACCCACCCTCTTCCCCACTGGCCTCTGGCCCTGGGCCTGGATGAGAAGGCAGGTGCCAAACCCACTCTCCCCTGCATGGCAAGTCAGACTGGGGTTGACAACCCCTGCCTTGGGCCGCTAAAGACAAGGCCAAGTGGAAACTTTAGTACAGGGTGGTGGGGCCCTCTGTCTCTCATCCCCTTCCTCTGACAGCTGCCAGGTAGGTCCTTTGAGGGGATCCCCATCACTGGAGATGGGGGAGTTTAAGGCCCTCTTGCCTAGACATCCTCTTCTGCATCTGGCAGTGCCTGCATGAAGATGAGGCAGCCTCTGTTAGTGGGCTGGTTTCCCAGCTGCATCAAATCCAGGGTTTGTGACACGCTAATTGAGAACAAGGGTTTGGTGCTGACATCGACATCCTTAAAGCACCCCGAGGGGCCCTGGCCCGCCGCCAGTGCCGAATAGCAGCTGGGCCCACAGGGGAAGACGGGTGCCAAGCTCTTCCACAGCACCCATGGAGGGAAGGTGCCAGGCGGCCTGACCAGGCCTGTTGGCATCTGCTTAACCCTAG
Seq C2 exon
ATGACGGAGCAGCGGAAACGCAGGCAACGCCTAGGCTTTGTGGATGTCCAGAACTGCATTAGCCGCTGAGGAGAGCCACCGAAGGCCCCAACAGGGGATGCTCATCACTGGAGACTGCGACTGGGAAGAACACTGCCCCCTCCCTCGGGTTGGGTGGCCCAGCCAGCTGGCCAGCCTCCACTCCCACTCTGCCAGACACCCTGACACCCACCCAGGCTTTGAAGAGCATGGAGGGGGAGCCTCAGAGCTGACAGTCCTGCTTAGAGCCCTTAAAAAGACTTGAAAGTTCACTGGGACTCAGTTTACCTTAATGCCTTAGCAGAAGATAAATCCTACCTAGAGACCTTTGTTCCTTAAAGCAATAACTGACAACTCTTTGTAGTCCTCCTTGTGGGTAGTTAAGAGTGGGGTCACCCCTTTAACTCCAAGCACTACATTTTGGCGGCTGCCGGCCTCTGGGGGAGGTGGCAGTTATGCTGTTACTAGTGATTTTAGGGCTTTGTTATTTAACTTATTTCAAGGGTGCTGTGCTCAGCCCTGCCCATGGCTGTGCAGCTCCCTCCGTGCCTCAGATCTGCTGTAGCCAGTGCAGACCTCACTGTCGTGTCCATGCCACCCCCGGCATGGCTCCAGGTGGCCTGGTGACTCCATGATGGACGATCTTGCTCCCAGGACCTGCCTCTTCCCAGGCTTCCTGGGGAAGAGTTGTACGCCCAGGCAACAAGGGCTGAGCTGCGCTTGCGTGGCTGTTTCATGACCGCTTGTTTTTCTCCTTTTGGTGTAATGTTTTACAAATCCTTTGGCCTGAGAACTAATATGTTAATTGCCTTAAATAAATTAATAGAAATCTAGTCCGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-ITPR3:NM_002224:57
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTTGTCAGCAATGAGGG
R:
ATGCTCTTCAAAGCCTGGGTG
Band lengths:
353-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)