GgaINT0141559 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4440271-4441244:-
Coord C1 exon
chr26:4441083-4441244
Coord A exon
chr26:4440735-4441082
Coord C2 exon
chr26:4440271-4440734
Length
348 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TGTCCTTGTTTGAACTCCAGATG
3' ss Score
8.32
Exon sequences
Seq C1 exon
AACAAGAACCTAGACTGGTTCCCCCGGATGCGAGCCATGTCGCTGGTCAGCAATGAAGGGGAAGGGGAACAGAATGAGATCCGAAATCTTCAAGACAAACTCAACTCAACGATGAAGCTGGTGTCCCATCTCACCTCCCAGCTGAATGAGCTGAAGGAACAG
Seq A exon
GTACTAAACATTATAAAAAACAGGAACGCTTGAGTAACACCCCATTGTACTAAAAAACCCTCTGTCCTTACCAAAATAGACACCCATTCCAAGAGCAGGAGGCAGAACCAGCCCATTCCTATTTAACTATGGATACAAATCAAAGGGCTCTTTTAGCTCTTCTGCAGGGAGTTAAGAACACTTAGGTCATGTGCTTTTTGTTACCTCCTCATCAGCTAGAGTCCAACTCATGGGGTGTTCTGGCAGATGCTTAGAGCAGCCCAGTCAGTCACACACCTGAGAAGCACACTAATGAACAGAATAACAGCCTGGTTTCCTACCTCACTTCTGTCCTTGTTTGAACTCCAG
Seq C2 exon
ATGACAGAGCAAAGGAAGCGCAGACAAAGGATGGGGTTTGTGGATGTCCAGAATACCATGAACCACTAAGAGACAGAAAAAGGATCAGCTTCACCCACTGAAGGACTAAACATACCTATCAGATGATGAGGCTGCTTATCCCTGGGTCCCATGCATGGACATCACTGTCAGAGAAAGCAGGACCACGTGGAGGGGCTTCCAAGTCAATATTTTCCTTAGATTGCTTGTAAGCAATTCAGGAACCAATGGCTGGCGGGGATTCCTCACAGTTCCTGGACCCACATGTTACTCCAATGCCCTGAGAGGAAGATAAATTATACAAGACTTTTATTCCTCATTGCAATAACTCTTTATTTTGCAAATGTGGGGGGTTGTATCTTTATCTCCATGTGCTACATCTGGGTGGCCTCCACCTCAGGTGTAGTGCAACTAGCTGTAGGGCTGCAGTATTTAACTTATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCTGGTGTCCCATCTCA
R:
TTCCTCTCAGGGCATTGGAGT
Band lengths:
358-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]