HsaINT0083345 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33694924-33696574:+
Coord C1 exon
chr6:33694924-33695085
Coord A exon
chr6:33695086-33695711
Coord C2 exon
chr6:33695712-33696574
Length
626 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGGCATCTGCTTAACCCTAGATG
3' ss Score
7.41
Exon sequences
Seq C1 exon
AACAAGAACCTGGACTGGTTCCCCCGGATGCGGGCCATGTCCCTTGTCAGCAATGAGGGCGAGGGGGAGCAGAATGAGATTCGGATTCTCCAGGACAAGCTCAACTCCACCATGAAGCTGGTGTCCCACCTCACTGCCCAGCTCAACGAGCTCAAGGAGCAG
Seq A exon
GTGTGCACCCCGCCTGATCCCAGGCCCACCCTGGGTTCTATCCCTGGGCAGTCCCTGCCTGCCTTCATCCTTCCTGACCCACCCTCTTCCCCACTGGCCTCTGGCCCTGGGCCTGGATGAGAAGGCAGGTGCCAAACCCACTCTCCCCTGCATGGCAAGTCAGACTGGGGTTGACAACCCCTGCCTTGGGCCGCTAAAGACAAGGCCAAGTGGAAACTTTAGTACAGGGTGGTGGGGCCCTCTGTCTCTCATCCCCTTCCTCTGACAGCTGCCAGGTAGGTCCTTTGAGGGGATCCCCATCACTGGAGATGGGGGAGTTTAAGGCCCTCTTGCCTAGACATCCTCTTCTGCATCTGGCAGTGCCTGCATGAAGATGAGGCAGCCTCTGTTAGTGGGCTGGTTTCCCAGCTGCATCAAATCCAGGGTTTGTGACACGCTAATTGAGAACAAGGGTTTGGTGCTGACATCGACATCCTTAAAGCACCCCGAGGGGCCCTGGCCCGCCGCCAGTGCCGAATAGCAGCTGGGCCCACAGGGGAAGACGGGTGCCAAGCTCTTCCACAGCACCCATGGAGGGAAGGTGCCAGGCGGCCTGACCAGGCCTGTTGGCATCTGCTTAACCCTAG
Seq C2 exon
ATGACGGAGCAGCGGAAACGCAGGCAACGCCTAGGCTTTGTGGATGTCCAGAACTGCATTAGCCGCTGAGGAGAGCCACCGAAGGCCCCAACAGGGGATGCTCATCACTGGAGACTGCGACTGGGAAGAACACTGCCCCCTCCCTCGGGTTGGGTGGCCCAGCCAGCTGGCCAGCCTCCACTCCCACTCTGCCAGACACCCTGACACCCACCCAGGCTTTGAAGAGCATGGAGGGGGAGCCTCAGAGCTGACAGTCCTGCTTAGAGCCCTTAAAAAGACTTGAAAGTTCACTGGGACTCAGTTTACCTTAATGCCTTAGCAGAAGATAAATCCTACCTAGAGACCTTTGTTCCTTAAAGCAATAACTGACAACTCTTTGTAGTCCTCCTTGTGGGTAGTTAAGAGTGGGGTCACCCCTTTAACTCCAAGCACTACATTTTGGCGGCTGCCGGCCTCTGGGGGAGGTGGCAGTTATGCTGTTACTAGTGATTTTAGGGCTTTGTTATTTAACTTATTTCAAGGGTGCTGTGCTCAGCCCTGCCCATGGCTGTGCAGCTCCCTCCGTGCCTCAGATCTGCTGTAGCCAGTGCAGACCTCACTGTCGTGTCCATGCCACCCCCGGCATGGCTCCAGGTGGCCTGGTGACTCCATGATGGACGATCTTGCTCCCAGGACCTGCCTCTTCCCAGGCTTCCTGGGGAAGAGTTGTACGCCCAGGCAACAAGGGCTGAGCTGCGCTTGCGTGGCTGTTTCATGACCGCTTGTTTTTCTCCTTTTGGTGTAATGTTTTACAAATCCTTTGGCCTGAGAACTAATATGTTAATTGCCTTAAATAAATTAATAGAAATCTAGTCCGTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCTTGTCAGCAATGAGGG
R:
ATGCTCTTCAAAGCCTGGGTG
Band lengths:
353-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development