RnoINT0076779 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5710513-5711702:+
Coord C1 exon
chr20:5710513-5710674
Coord A exon
chr20:5710675-5710978
Coord C2 exon
chr20:5710979-5711702
Length
304 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGACAACTCTTTTAACTCAGATG
3' ss Score
4.9
Exon sequences
Seq C1 exon
AACAAGAACCTGGACTGGTTCCCACGGATGCGCGCCATGTCCTTGGTGAGCGGCGAGGGCGAGGGCGAGCAGAACGAGATCCGCATCCTGCAGGAGAAGCTTGGCTCCACCATGAAGCTGGTCTCGCACCTCACCGCCCAGCTCAATGAGCTCAAGGAACAG
Seq A exon
GTGTGCTCCCAGGCTGGGTGTCCCTGGCGTTGGTGCCATGTGGGGTAGGAGCCATCGAAGTCATGGGGACCCTGTTTCAGGTTGAGACTTGCTTGCCAACGGTCCTTTCTAGGGCGGCTCGTGGTCTCCTGACCACAGCACCAATCAAAGGTTTGACTCGCTATCGAGAGACAACCTGGGGGTTGGGGCTGACCATCTGCCATCAGGGCCAAGGGGTGGCTGGGCCCTTTGGGGAGGATGCAGACTTTCATGGTGCTGTGGAAAAGAAAGCCAGGCCACCCAACTGACAACTCTTTTAACTCAG
Seq C2 exon
ATGACGGAGCAGCGGAAGCGGAGGCAACGTCTGGGCTTCGTGGACGTGCAGAACTGCATGAGCCGCTGAGCAGAGCGGAGCCTCGGAGGCCCCCACGGGAGGCCGGCTGCCCACAGCGCCGCCCTTCCTTCAGGTCAGGTAGAAGCCAGGTGCCTGCCCCATCTTCAGCTCAGCTGCCACCCTCCCTCCCCAAGCCAGGCTCTGGCCAGTGGGAGTGCCAGAGCAGAGCACGGTCCTGCTTAGTAAGTACCCTTGAAGAGACTCGGTTTACCTTAGTGCCTTAGGGGATGCCAAGTCCTCCAGACTGCTGTCCTTCGAAGCAGTGACTGGCATTCCTCAGTGGCCCTGGCAGGTGGTTAAAAGTGGGCTGCCTCTCACCTCCAAGCACTACATTGTGGCTGTCCCCTGCCTGCCACCCTGGCTCAGGAAGGTGGTAGCCTGCTGTTATTAGCTTCCTAGGGCTTTGATATTTAACTTATTCCTGGGGGCCATCCCACCCTCCTGTGCCTGCTGGGGACAGTGTGGCCCCGTCCCAGGAGCCTCATGACTCAGGATGGACCTTGCTCCCAGGACTTTCTCTAGGCTTTGTAGGCAAGCCTCACAAGCCCAGCAACAGGCCTGGGCTGTGTGACAGTGGCTTCTCTCTTTTTGGTGTAATGTTTTACATGTCCTGTGTCCTGGAGACTAATGTGTTAATTGCCTTAAATAAATTAATAGACTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCATGAAGCTGGTCTC
R:
TGGCATCCCCTAAGGCACTAA
Band lengths:
351-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]