BtaINT0078612 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7720211-7721019:+
Coord C1 exon
chr23:7720211-7720294
Coord A exon
chr23:7720295-7720872
Coord C2 exon
chr23:7720873-7721019
Length
578 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
AGCCCACAGCCCGCCTGCAGGGA
3' ss Score
2.12
Exon sequences
Seq C1 exon
GTCAACTCTGTGAACTGCAACACCAGCTGGAAGATCAACCTGTTCATGCAGTTCCGAGACCACCTGGAGGAGGTGCTGAAAGGG
Seq A exon
GTAAGGACTGGGGACACCCCTTCCCCTGCCGCCCCACCCACTCCTGGTCCCCCTGCCAGCCTATGCCCACCTGCCGGGCACCCGGCTCTGCTCCCTGTCCCGTCCGTGCTCCACGCACCTCCTTCTCTGGCTCCATACCCCCTGCAGCCCACCCCACCCCGCAGGGCCGTTCCCAGCCGCCCCAGCTGGCCTCTTCTCTGTCTCTGGCCTTGAAACCCCTGCTCCATCCGCTCCCAGTCCTGGCTGAGCTCACTTTGTTTTCTGGGAAGGGGCCGTGGGCACAGATCCTCTGAGCACTCTCTCCCCTCACCCACGCCTCTCCACAGTTCCAAGCCAAGCCCCCTACCCTCTGCCCCATGCCCTCTCCGTCAAAGATGCCAGGCTGCCTGGTCAGGGCCTGTGCCTTCCAGGGTGGGCAATCGAACACGCGGGGTTTCCCCTGCCCGTGGCCGCCCTCTGTGGGGGTGGGCTGGGCTCTGTGTACCTGCTGGCTCTGGAAGGTGTCTAAGACGGGGCGGGGCGGGGGCTCGCCTGCTGGGAGGGTCCCCGGCCGCCCTGAGCCCACAGCCCGCCTGCAG
Seq C2 exon
GGAGACGTGGTGCGGCTGTTCCACGCGGAGCAGGAGAAGTTCCTGACGTGCGACGAGTACAGGGGCAAGCTGCAGGTGTTCCTGCGCACCACGCTGCGCCAGTCTGCCACATCAGCTACCAGCTCCAACGCCCTCTGGGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
NA
C2:
PF0281514=MIR=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCTGTGAACTGCAACACCA
R:
CTCCCAGAGGGCGTTGGA
Band lengths:
222-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]