RnoINT0076781 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5675905-5677842:+
Coord C1 exon
chr20:5675905-5675988
Coord A exon
chr20:5675989-5677695
Coord C2 exon
chr20:5677696-5677842
Length
1707 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
3' ss Seq
CACCCTACCCCCACCCTCAGGGA
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTCAACTCTGTCAACTGCAACACCAGCTGGAAGATCAACTTATTCATGCAGTTCCGGGACCATCTGGAGGAGGTGTTGAAGGGG
Seq A exon
GTAGGTGCCCCTCCCCACAGGCCTCTTCCTGCAACCCTTCAGCTTTCACCCCTCCCCCCAGGAAGTCCTCACGTGTCCCGCTACCTCTTCTGCCCTAGAGGTGGTCAGAACCATTGAGCAACAATACCCCCCCCAACATCCCACCCCCCCACCCCACCCCCGTGCCCCATCTCTGTTCTGTGGGCCCCACGTTGCGCCCTAAGCTCTGGCAGGGAAAGGCTGCTCCTGCCTGCTGTCAGGGGTCAGTGCCCTTCTCTGTCCCGGACAGGCTAGTGTGAACACTGGGACAGGAGGAGGCGGGGCTGAGGGAGAACAGCTTGCTATACCCACAGTGAATAAATCCTGAGGGGAAGGATGTTTGTGAAGCCTGAAAACCAAGTGTCTGATGGAGAGGCAGGTTAGGAGTAGGGTAGAGTGTGAGGCACTCCAGTTAGAATAGTCTGGGGAACAGTGAGGACACTAGGCCTCAAAGCAGGTTCCTTGAGGGTGCCACCCTACCCAAAAGCTCCAGGCCCACCATTAGCTTCTAAGCTGTGTTTCCACGGTCTGCCTCCCTCGTCTCTCCTATGGTCCCGGCTCTTCCCAGCAGCCTGCGTTGTTGAAGTGCTTTCTCCCTCTGTCCACTAAGCCTTCATGTTGTCCAGAGCCCGACCCGTGGGCCCCTCCCCAAAGCCTCTCTGTGGCGCATTCCAGCACATGTAAAACAAGCCCTCGGGCTCAGCTCTGTGCCTTGCCCACTGCAGCTTCTGCTGGGGCCATCGTGGTGTTGGGGTTTGAGTCCAGGCAAGCTAAGGCACGGCCTTCTCACTAAAGCCCCTCAGTGTCATACTTTGCATGGGACATTCAGTGTCCCTGGGTTCCGCTGTAGGGACAGATGCAGTCTGGGTACAGATGCTGGATCCTGTCTGCCTCTACCTGACAAGTATGTCTAGAGCCAGGTTCAGGGCAGGAAGACAGTGCTATTAGATGATCGTGGGCTGGGGGCTATGCTCTGAGAACCTGCTGAGTGATAGCCACGGAGGGAGGAAGTACGCAGGAGGGACTAAGAGGCTGGCCCTGGGACGAGGCAGGGACGCTCCCACCCATCCTGGCTGTGTGGCTCTTGGCAGGATGCCTCCCTCCTCTGCTGAGGTAGAAAAGTGTATTCTGTCGTTAAACCTCCTAAGGTTTTACCGGAGATAGGGTTCTTTCCATTTTCTAGAAGAGGCAGCTGGGGCTTAGGAACGTTACGGAACTTTCCCGAGCCTCTTGCTGCTCGTAAGACCAGGGCCAGGAGTCAAATTTGAGGTTTTCTGTCTAAGGCCTGGAGGTGAACAAAAGCCATGGCTACAGCCACCATGGAGAGCAAAAGAAATGGCGTGGGGGGATTTCCAGGGACTGAACAGGACAGGCTAAGGAAGAGGAGGTAGCTCTGGGCTGGGAGACTGAGAAGGGGAGAGTCCGACCTAGACTTGGCTGTTAGAAGTGTTTGGACGTAAGGGATGGAGGTGCCAGGCGGGTTGGAATGGGGAAAGCTGAGGTAGAGGACTGTTGCTATACCCCGCTGGCTTGTGGCCCGAGGCTTCTCACTCTCCACTCACCTTCCTAGAAAAGCAAGAGGGGTCCTGTAGGCCAGGACACGTCCGAGGAACCGGGCCCTGCACAGGGTCCCTGAGCCCGAGGGTGTGGCCGTGAACATCTGACTCCACACCCTACCCCCACCCTCAG
Seq C2 exon
GGAGACGTGGTGCGGCTGTTCCATGCAGAGCAGGAGAAGTTCCTGACCTGTGACGAGTACCGGGGCAAGCTTCAGGTGTTCCTGAGGACCACGCTGCGTCAGTCCGCCACCTCGGCCACCAGCTCCAACGCGCTCTGGGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
NA
C2:
PF0281514=MIR=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCTGTCAACTGCAACACC
R:
CTCCACCTCCCAGAGCGC
Band lengths:
230-1937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]