GgaINT0141509 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4585063-4586223:-
Coord C1 exon
chr26:4586140-4586223
Coord A exon
chr26:4585210-4586139
Coord C2 exon
chr26:4585063-4585209
Length
930 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CTGTCACATCCCGGTGCCAGGGG
3' ss Score
5.01
Exon sequences
Seq C1 exon
GTGAACTCGGTCAATTGTAACACCAGCTGGAAAATCAACCTCTTCATGCAGTTCCGTGACCACATGGAGGAAGTGCTGAAGGGG
Seq A exon
GTAAGGAAGGAGGGTTGGCCACCGGCCATGGGGACACCATAGGGTCAGGGGACCCCACACTGGTCCCTCGTTGGGCATGACATGTGAATAGCTGCTTGGCTGTGAGACAAGGGCAGTATGCCTCGAGGATCTTGATTTATAGGAGAATTCATCACTTGGAGCACCTAAAAGTGTGCTGGGGATTTTAGTACCCACTGTCAGCAGGTACCCCAGAGGGCATCAGGTTCCCCTCTGCCTTCTTGTATTAAGTTGTCTCTTGAGGACAATTTGAGGCACGCACGGTGCCAGCAGTGTTTCTAGCCACAGGGACAGCTTTCAGCTGTTAAGCTGTGCAGCAGGGCTGGCTGCTGCCTGGGAAAGGAATTTTCCCTGCAGAGCTATTGTTCAGGTCGGAGGTCCTCCAGGAAGCAGCTGGATGGATATTGATTGTGAGGACCTTGCAGATCCCCATCCTCAGGCGCCCACTTATCCCTGGCTTCCTCTGCATCCTCCTGCTGGGGCATGAATGCCATGACAGCATTGGTGAGTGGAGCCTCTGCCCGCTCCAGAGATGCAAAGTGGAGATTTGCACCCCAGGGGAGTAGGAACAGAGAGAAGCAGCTTACACGAGTAAACAGAGTGAGGGCATTGCAGAGTAAGGTACCCCATGTCCCCACCACTCTGTGCATGTGCAACGTGCCTTCCCTCTGTTCAGAGGGTATAGGATGGGTAGGACTGCAAGAGCTGGCAGTGCTCTGCAGTGCTGGTGGTCCCACTGTGCTGCAACTGGGAGCTGCACTCTGCTCTGGGCCATGTGTGGGTGATCCCAGCCCCTTTGCAGGGCTATGGGGTCAGAGTAGGAGCTGCACTGGCTTGGAGGAGGTGAACCACAGCCACGGGGCACGGAGTGAATGCTGCCTCTGTGTCCTCACTGTCACATCCCGGTGCCAG
Seq C2 exon
GGGGACGTGGTGAGGCTCTTCCACGCCGAGCAGGAGAAGTTCCTGACCTGTGATGAGTACAAGGGCAAGCTGCACGTCTTCCTGCGCACCACCCTGCGGCAGTCGGCCACCTCGGCCACCAGCTCCAACGCCCTCTGGGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
NA
C2:
PF0281514=MIR=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTCGGTCAATTGTAACACCA
R:
TCCCAGAGGGCGTTGGAG
Band lengths:
223-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]