MmuINT0084588 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27224536-27226043:+
Coord C1 exon
chr17:27224536-27224619
Coord A exon
chr17:27224620-27225896
Coord C2 exon
chr17:27225897-27226043
Length
1277 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTAACCCCACCCACCCTCAGGGA
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTCAACTCTGTCAACTGCAACACCAGCTGGAAGATCAACTTATTCATGCAGTTCCGGGACCACCTGGAGGAGGTGCTGAAGGGG
Seq A exon
GTAAGTCCGGAGCCCCTCCCCCTCAGGCCCCTTCCTCTTCCGGGAAATGACCACCTCAGCTGTGTAACCCCTTCAGCTTCCCTCTACCTCCAGCACGTCCCAACGTGTCCCCGCTGTCTCTTCTGCCTCATTTTCTTCTTCGGAGTCCTCCCTGCCCAGTCCTCCACCTCAGGGTGCCCAGATCCCTTGAGCAGCCTTTCCTGTCTCTAGTTTTTGTTCTGTGGGCCCCACGTTGTGCCCTGAGCTTTGGCAGGGAGAGGCTGCTCCTGCCTGCCGTCAGGGGTCAGGGCCTCTTCTCTGTCCCCAACAGGCGACAGGCCAGTATGTGCACTTGGGAGAGGAGGAAGGGCTGGGGGAGGGCAGCTTGCTACACCTGCAGTGAATACATATTGAGGCAGGGGATGTTTATGAAGCCTAAAACCCAAGTTTCTGGTGGAGAGGCAGGTTAGGGGTAGGGTAGAGTGTGAGGCACTCCAGTTGGATTAGTCTGGGGATCCCTGAGGATGCTGGGCCTCAAAGCAGGTTCCTTGAGGGGGGGCCATCCTGCCCAGAAGCCGCAGGCACACAGTTTGCTTTTTCCTGGTTGTGGTTCCAGGGGTCTGCCTCCCTTGTCCCTCTGATGGTCCCAGCTCTGCCCAGCAGACTGTGTTGTTCAAGTGCTTCCCCTCTCTGTCCACTAGGCCTTCATATTGTCCCAGCATCAGTCAGAACTCCCCATCCCCCCCCCCCCCAAAGCCTCCCTGTGGCGCATTTCAGCACAAATAAAACCAGCCCTCAGGCTCAGCTCTGTGCCATGTCCACTGTTCTTCCAGAGATCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATTCCCTCTTCTGATGTGTCTGAAGACAGCTACAGTGTACTCATATACATAAAATAAATAAATCTTAAAAAAGAAGAGAGAGAGAATGTTAAAAAAAAGAAGAAGAAGGAGGAGGAGGAGGAGGGGGAAGGAGAGTCCATGCCACCTTCCTGGACTTGGTTATTAGAGGGGCTTGGAAGTTGGTAAGGGTGGGAGGTGCCAGGCAGGTTGGAATTTGGGAAGCTGGCATAGAGGGCTATCACAGCACCCTGCTGTCCTGTGGCCAGAAGTTTCTCCCTCTCTGCTCACCTTCCTGGATAAGCAACAGGAGTGCTGCCGGCCACGTCTGAGGGATCAGGGTCCCTGTGCCTAAAGGTATATCTGTGAACATCTGACTCCATGTTCTAACCCCACCCACCCTCAG
Seq C2 exon
GGAGACGTGGTGCGACTGTTCCACGCGGAGCAGGAGAAGTTCCTGACCTGTGATGAGTACAGGGGCAAGCTGCAGGTGTTCCTGCGGACCACGCTCCGCCAGTCCGCCACCTCGGCCACCAGCTCCAACGCACTCTGGGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PD(8.8=71.4),PF0281514=MIR=PU(2.0=14.3)
A:
NA
C2:
PF0281514=MIR=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCTGTCAACTGCAACACC
R:
CTCCACCTCCCAGAGTGCG
Band lengths:
230-1507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: