BtaINT0078614 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7721196-7721898:+
Coord C1 exon
chr23:7721196-7721291
Coord A exon
chr23:7721292-7721847
Coord C2 exon
chr23:7721848-7721898
Length
556 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CATCTTGAATCTCTGAGCAGGAG
3' ss Score
4.77
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCGTGCCGTGGAGGAGCTGGCCACTGGAACGGCCTCTACCGCTTCAAGCACCTGGCCACCGGCAACTACCTGGCTGCTGAG
Seq A exon
GTGGGTGGGGAGGCAGAGGGCATCCTGGGAGCCCCAGCCCCACATCCTGAGGGTGTGTAGACACTCCCAACAGGTTGATCTTCCACACATGCATGAGCGTGTGTGCCTGGCACACGCCTGCACGCAGACTCACATGTCTTTTGACTCTGTTTATTTGTGCTTATTTATCTATTTAACCGGTATTTGTAGTCATGCTCGGGTGATGGTAAGTCTCACGGGTGTGATGATGCTCCTGCTCTGCTAGCAGCTGTTCTGGGCCCTGGGGCTACAGCAGTGAGCTCGACTCCCAGCCCTGTTGCAGCTTAACATTCCGCATCCGTCTTTGTCCATGACGCACAGGCTTGTGTATATCAGGACGTGTGTGTGTGTGTCTGTCCGTCCATCCAACTGTGGGTCTGTGGAGGGCAGTGATCTTGTGGGTGTGTCCTCCAGGGCTGGCATGAATCCTGGGGCCGGGCTGGGCACCCCTGGGAGGGTAGGGGCTGCCTGCCCCAACCCAGGGTCGTTTTGGAGCGGGGATCATGTGGATAGCTCCCCATCTTGAATCTCTGAGCAG
Seq C2 exon
GAGAACCCCAGCTACAAGGGTGATGCCTCTGATCCCAAGGCAGCAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.941
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
NA
C2:
PF0281514=MIR=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]