MmuINT0084590 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27226207-27226611:+
Coord C1 exon
chr17:27226207-27226302
Coord A exon
chr17:27226303-27226560
Coord C2 exon
chr17:27226561-27226611
Length
258 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CACCTTGTACACCTGTTTAGGAA
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCCTGCCGCGGGGGAGCCGGACACTGGAACGGTCTGTACAGGTTCAAGCACCTGGCCACGGGCAACTATCTGGCCGCTGAG
Seq A exon
GTGAGTGGGGCGGTGCATGGGGCATCTGTGTGTGCAGGGGACGCAGCTCACTCGTGTATGCTTGCTCATGCATGGGCCTATAAAGAAGGGACCATGGTGGGCTCCCCTGTACAGTTCTCCTGGGAGTCATGTGGACTGGGGTAGACACCTTGTTGGAAAATACCTTCTGGGGTGACCCTGTGTTTGGTTGGTGTGTGTGTGTGTGTGTGTGTGCTGATAGTGTCTGGTAACCACCCCTCACCTTGTACACCTGTTTAG
Seq C2 exon
GAAAACCCCAGCTACAAGGGTGATGTCTCAGATCCTAAGGCAGCTGGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.765
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
NA
C2:
PF0281514=MIR=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCACCACGACCCCTG
R:
AGTCCAGCTGCCTTAGGATCT
Band lengths:
144-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: