RnoINT0076783 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5678006-5678385:+
Coord C1 exon
chr20:5678006-5678101
Coord A exon
chr20:5678102-5678334
Coord C2 exon
chr20:5678335-5678385
Length
233 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
CACTTTGTACGTCTCTTTAGGAA
3' ss Score
9.9
Exon sequences
Seq C1 exon
GTGGTCCACCATGACCCCTGCCGCGGCGGAGCGGGACACTGGAATGGTCTGTACAGGTTCAAGCACCTGGCCACGGGCAACTATCTGGCGGCTGAA
Seq A exon
GTGAGTGGAGGGTGTATGTGGCATCTGTGTGTGCGGGGGACACACACAGGTCGCATGTGCGTGCTTGCCCACAATGGGCACCCCTGTATGCCTCTCTGGAGTCGTGTGGACTTTGGGCCTGGGGTAGGCACCTTGTTGGGAAGTATCCTCTAGGGTGATCCGGTGTTTGGTGGGGTGAGGGTGGGGTGCTGATAGGGTCCAGTAGCCACCCCTCACTTTGTACGTCTCTTTAG
Seq C2 exon
GAAAACCCCAGCTACAAGGGTGATGTCTCAGATCCTAAGGCAGCAGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.824
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
NA
C2:
PF0281514=MIR=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCATGACCCCTGCC
R:
GGTCCTGCTGCCTTAGGATCT
Band lengths:
142-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]