GgaINT0141511 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4463364-4464652:-
Coord C1 exon
chr26:4464557-4464652
Coord A exon
chr26:4463415-4464556
Coord C2 exon
chr26:4463364-4463414
Length
1142 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTCCCTCTTTAACTTTTCAGGAA
3' ss Score
11
Exon sequences
Seq C1 exon
GTGGTTCACCACGACCCGTGCCGAGGGGGGGCTGGGCACTGGAATGGCTTGTACCGCTTCAAGCACCTCGCCACAGGCAACTACCTGGCAGCAGAG
Seq A exon
GTAAGGGGATAAGCAGAGGGGTGCAGAAACATGCCCTGCCTTGAGAGGCTGCAAAAGCACCGTCCCTTAGAGCAGTGATGTCCTGCCTTGCCTTGTCCCCTCATGCCGTGACATGGGGACATTTGCAGGACAGCACCTGGCCCTGCTCCCGTTTGCTATTGCAGTGTTCTGCCCTCACAGGTAGAGATGCTGACACCGAGGCCATGAACGATGTTGGGGTTTGCCCATTTGTTAGGGATTGTCCCCTCCAAAATCTCCTGCCCTGCAGTGCAACATGCACTGCCAACATCACTGCTTCCGCTGCCTCCCTCTGGCCCCGGCACACAGAGCTGGGAGGTGGGGGGGTTGTCGGGGCTTTCCTCTGTTTGCTCACCCTGGGCCAAGCTGTCCCAGCACAACCTCGTGAGATGGAAGCGGGAGATAACTCATCCGGCTGTGTTTAACTCTTCCTGACCAAGTTTTGCCCTTCCTCATCCTCTGGTCCCCTCAGCTGGGATGCTGGGGGAGACATGGGCAAAATCTGAGCCTGGAAATGCCATCTGCCAGGTGGTTTTTGCTCCCATTTAATTGGCTCAAGGCCTCCTGATAGAGAAACAAAGGGGTTTCTGCACTAAAAGAATGTGGTTTATATGACTGCTGCCAGGGGAGCAGGGCTGTGCCTGGCGGTGCTGGGTGCATTCCATGCCAAAGGCAGGCAGCACTGCAAAAGATGACCAAAGGCAGTCACCCAGGGCCCCTTCTGCTGCTGGCAGTTCTGCCTCTGAAATGGCTGCTGAACTGGGGTGCTTTCAACCAAAAGGCATGCAGATGGCATCTGAGGAGGAAAGAAGATCTCCTCTAGGGTTGCACTGGCTTGCATTGCTCAGCGAGACCCCAACCTGGGACCTCGAGGGATTGCCAGCAGGAGCTCATCCTGCTGCAGTGCAGAGCCCCAGCTCTGAACCAGGGCTCAGCTTCTCCCTCTCCTCTCTCATGGGGCTGGAGCACTCTGCACTGGGATGGGTTCTGTCCTCCAGCCCCATCTGGGCAGGTTTCCTCTCCGCACTGTGATGAAGCAAGGCAGGAACCCCACACTCAGGGCTTTGGAGGGGCAGAGGGGGAGGGCTGATAGCTGTCTTTCATCTCCCTCTTTAACTTTTCAG
Seq C2 exon
GAAAACCCAAGTTATAAAGGAGACGTGGCTGAGCCCAAAGCAGCGCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.824
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
NA
C2:
PF0281514=MIR=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]