HsaINT0083349 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33662911-33663550:+
Coord C1 exon
chr6:33662911-33663006
Coord A exon
chr6:33663007-33663499
Coord C2 exon
chr6:33663500-33663550
Length
493 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CATCTTGTATCTCTGTCCAGGAG
3' ss Score
8.52
Exon sequences
Seq C1 exon
GTGGTCCACCACGACCCCTGCCGTGGAGGAGCTGGGCACTGGAATGGCTTGTACCGCTTCAAGCACCTGGCTACAGGCAACTACCTGGCTGCTGAG
Seq A exon
GTGAGCGGGAGGTAGAGGGCATGCTGGGGCTCGTGTGTGCATGTACACGTGGGTGTGCGGGAACATGTGTGCACATACTTGCATATGTGGCACATGTGCCTATGGACCCTGACTTCTCTGCACTCATGCATTTATCCAATATTATCAAATAAAGGCATGACTGTAAATAAGCCTAATAAATATCACTGTGCTCCTACTATGTGCCAGGCACTATTCTAGGCACAGGGGATACAAAGTGAGCAAAATTTCCCGTCTGTCTGTAATGCGCACACTTGTGTGTGTTGGAGCATTGGTGTGTATGTGTGTATGTTCATTTGTGGTTCTATGGAGAGGGGCCATGAAGGGCTCCCCTGGAATGATATGGGCACCCCTGGGAGGGTGCAGCCTGCCTGCCCAAACCCAGGGCCCTATGTAGGTGACCATGTTTTGCAGTGGGTCGTGTGGGTATAGTTTGGTGTCCAGTAGCTCCCCCACATCTTGTATCTCTGTCCAG
Seq C2 exon
GAGAACCCCAGTTACAAAGGTGATGCCTCAGATCCCAAGGCAGCAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.5=100)
A:
NA
C2:
PF0281514=MIR=FE(8.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development