BtaINT0079618 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34159737-34163051:+
Coord C1 exon
chr2:34159737-34159929
Coord A exon
chr2:34159930-34162778
Coord C2 exon
chr2:34162779-34163051
Length
2849 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
TTTCTTCTCTTTTCTTTCATCAG
3' ss Score
2.28
Exon sequences
Seq C1 exon
ACTTGAATCCCAAATGACTGCAGACATCCAGACCATCTTACAGCTGCTGCAGAAACAAACCACTGTGGTGCCACCAGCCTATAGTATGGTCACTGCAGGAGGAGAGTATCAGAGACCCACCATCCGCCTGATGAGGCCTAGGCATCCGGTCGCGTCCATCAAGACAGATCGAACTTTCAGTCCTTCCTCACAG
Seq A exon
GTGAATATAGACAAGAGCGTCTCCCGAGGGGTGTTTCCAGGGACCACCTAAATCAGAATCTAATAACCTGGGCTGCTATAGAAAATGCACACTCTCATTTCCATCTCTGTCTCTACTCAATTAGAACGTCTGGGAATGAGCCCTGTAATCTCTGTTTTAAACAAGCTTCCCCATACAATCCCTCTGGGTCGTCCCAGTGCACCAGCCCCAAGCATCCAGTATCGTGCATCGAACCTGAACTGGCGACTCGTTTCATATATGATATTATACATGTTTCAATGCCATTCTCCCAAATCATCCCACCCTCTCCCTCTCCCTCTCCCACAGAGTCCAAAAGACTGTTCTATACATCAGTGTCTCTTTTGCTGTCTCGTATACAGGGTTATTGTTACCATCTTTCTAAATTCCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCTTTCTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGTATTCTTTTTAATGGCTGAGTAATACTCCATTGTATATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGGACATCTAGGTTGCTTCCATGTCCTGGAACAGTGCTGCAATGAACATTGGGGTACACGTGTCTCTTTCCCTTCTGGTTTCCTCAGTGTGTATGCCCAGCAGTGGGATTGCTGGATCATAAGGCAGTTCTATTTCCAGTTTTTTAAGGAATCTCCACGCTGTTCTCCGTAGTGGCTATACTAGTTTGCATTCCCACCAACAGTGTAAGAGGGTTCCCTTTTCTCCACACCCTCTCCAGCATTTATTGCTTGTAAACTTTTGGATCGCAGCCATTCTGACCGGCATGAAATGGTACCTCATAGTGGTTTTGATTTGCATTTCTCTGATAATGAGTGATGTTGAGCATCTTTTCATGTGTTTGTTAGCCATCTGTATGTCTTCTTTGAAGAAATGTCTATTTAGTTCTTTGGCTCATTTTTTGATTGGGTCATTTATTTTTCTGGAATTGAGCTGTAGGAGTTGCTTGTATATTTTTGAGGTTAGTTGTTTGTCAGTTGCTTCATTTGCTATTATTTTCTCCCATTCTGAAGGCTGTCCTTTCACCTTGTTTATAGTTTCCTTTGTTGTGCAGAAGCTTTTAAGTTTAATTAAGTCCCATTTTTGCTTTTATTTCCAATATTCTGGGAGGTGGGTCATAGAGGATCCTGCTGTGATGCATGTTGGAGAGTGTTTTGCCTATGTTCTCCTCTAGGAGTTTTATAGTTTCTGGTCTTATGTTTAGATCGTTAATCCATTTTGAGTTTATTTTTGTATATGGTGTTAGAAAGTGTTCTAGTTTCATTCTTTTACAAGTGGTTGACTAGATTTCCCATCACCACTTGTTAAAGAGATTGTCTTTAATCCATTGTATATTCTTGCCTCCTTTGTCAAAGATAAGGTGTCCATATGTGCATGGATTTATCTCTGGGCTTTGTATTTTGTTCCATTGATCTATATTTCTGTCTTTGGTATAGGAGGGAGGAGGGAGGAGGATTCAGGATGGGGAACACATGTATACCTGTGGCGGATTCATTTTGATATATGGCAAAACCAATACAATACTGTAAAGTTAAAAAAATAAAATTAAATTAAAAAAAAAAAAAACAAGCTTTCCTCAATCCCACCCCTTCTCCCCAATTCTTTTGCTCATTTAAAGCTTGAGAACAATGGACCTAGAAGAGTGATCTTAAAACACTAGTGTTTTTTTTTTTTTTTTTTTAAGAAAAAGCTTTTTTCAAGAGTTAATAATCTACTTAAGTTTATAAATGGTAGATCATTGAAAACTAAAGACTACCCCTGGGTCCAAAAAAACGTTTAGATAAAGGTTTGTAATTTGCTCTAGAGACACTCTTGAACAGGATCTGGGGAAGGAAGGGGCAAGAACTATGGCCAGACAAGACCTGAGACCAGGAGTAATCAGATAATAATCACATCTGTGCCCACCCATCACTAAGGCACTCTAAAAGTTTCTTACCTTGATGATGGTAGGAGAAATGTTAGTGTCCTTTATTTTCCCTCTGAAGTCCTGTGAGGAAGCCCTCTGATTTTGTTAATGTGAAAAGTGTAATTCCTTTGGAATTCCATTTTGGGAATCCTTCTTAATCACTTAAATACTGTGGCCAGACTGGACTTAAGAACAGCAATTTAAATAAGAATTTACAGAACAATCTTGCAAAAACTTTTTTAGAAGTTTGGGGATTGAGTGGAAAATGCTCTGGGGAATGAAACTCTTTTAATAGCACAGAGTAATGTGCCTGAAGGAAAATAATGCACTCTCTCTAAAGTATGAAGGTAGACATTGATTTGTCTCTAACTGGTTTTGAATGACTGGGAAACATGTGAAATCATGCACCTTGTTTTTTGTTTTCAGTGGATTTACATGACACTTTCTGCCAAGGGATGGTTGATTTTCCTTCCTTTTTCTTTCTCTGTGTTTTCCAAATGTACTCACCAAATGACCCACCTTTCTGATCCCAGTTACATTGGGAATTTTGAGTTAAAACTCATCTGGAAAACTCAGTGTGAAATATTGTGTTTAAAATAATAATAATAATCTGATATGGCTTCAGAGTAAAATTAAAGATCTTGGAATGGCTGGGTAAGATTATCTAAACTGACATCTGACCTCCAATGTCTTGACCCACCTTTGAGAGGGAAAGATTGGTTAAGACCACTAATCAAATACAGATTTATGGGAGAAGTAAGCATGTTTAGATTTCATGGTGTCATTTAGAAATATGTCCAAATGAATTATAAAAATATGTTTTCTTCTCTTTTCTTTCAT
Seq C2 exon
CAGTGTCCTGAATTTCTAGACCTTGAAAAGTCTAAACTTAAATCCAAAGAATCCCTCTCAAGTGGAGTGCATCTGAACACCGCTTCAGAAGACAACTTGACTTCACTTTTAAAACAAGACAGTGATCTCTCTTTAGAGCTTCACCCCCCAAGGCAAAGGAAAACTTGCCTTCATCCAATTAGGCATCCCTCTTTGACAGATTCATCCCTAAGCACTGTAGGAGTCTTGGGTCTTCATAGGCATGTTTCTGATCCTGGTCTTCCGGGGAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899:ENSBTAT00000002469:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]