DreINT0013155 @ danRer10
Intron Retention
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10335290-10341230:+
Coord C1 exon
chr6:10335290-10335437
Coord A exon
chr6:10335438-10340957
Coord C2 exon
chr6:10340958-10341230
Length
5520 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TGCTCTGTTTTCATCTTCAGAGT
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCTGGAAGCGCAGATGACTTCAGACATCCAGGCGGTTTTGCAGCTGCTCCAGAGGCAGAGCGCTCTGGGTCCTCCAGCGTACAGCACTGTAGCCGTCAGCCCAGAGTACCAGAAGCCCATACAGCCCGTCACTGCCATACAGACACAG
Seq A exon
GTAACACACTTCACAATGGAAAGTAGCAGAAGTCAGCATAGTTGGGTAAACTTAGAGCGCAGTGAATGGGAGAGTACAACAATTAATGTTTTTACAATCTTTTTTGATGAAATAATAAAAGAAAAACTCCACAATAGTGGTATCAAGGCTTTCAGAAAAAGGAAAAAAAATAGAGACTGATAACGGCAGCCAAGAAGAAAGAACAACGTCAAATGTACTGTCCTGCCCTGCCCTGCCCTGCCCATAGACACTGCATTAGAAATGCCTCACATAAGCGCAGGCCTGGATTAAGAATTCAGAGGCTCTTGGGCATATTGTCTTGTAGGGCCCCAACCCGGCCGCACTACTATAGTTCAACTGAAAAATAAGAATAATATAATTTTTTTATGAAATGAATCTATAATGTATTGCTCGCATTTTTAAACATTTAAGAAATATAGTACAAATATATAGTTTACAAAGATTTTACTTGTATTTAAAGCATTTAAAGCACACTTTAATAAAAAAAAAACCTAATAAAACTAGTAAAAATGTATGGTTTTTAGTATACTTGTTAAAGTTCAGTGAAGCAGTACTAAATATATACGGTTGAAGTCAGAATCATTAGCCCCCCTGAATTATTAGCCCCATGTTTGTTTTTTCCCTCAATTTCTGTTTAATGGAGAGATTTTTTTTCAACACATTTCTAAACATAATAGTTTTAATAGCTCAATTCTAATAACCTATTTATTTTATCTTTGCCATGATGACAGTACATAAAATTTGACCAGATATTTTTCAAGACTCTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACCAGGTTAATTAGGTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTATAACGATGGCTTATTCTGTAGACTATCGGAAAATATAGCTTAAAGGGGCTAATCATTTTGTCCTTAAAATGGTGTTTAAAACTTCTTTTATTCTAGCCGAAATAAAACTAATAAGACTTTCTCCAGAGAAAAAATATTATCAGACATACTGTAAAAAATTCCTTGCTCTGTTAAACATCATTTGTGAAATATAAAAAAAAAAAAAATAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATTTAAAGAATATTCATTGTAAATAAAGCTTAGTTGTATTAAGAAGTTGCTAACATTTAACACCAGGTGGAAAATAAAAACTAAAATATTTCCTTTCTATTATTTCTGTAATGGGGATAAAAAGAAGAATGGGTTCATCAGACACCGGATTCGAACCAGGTTGATGATCAATCGAGTCAAAACTTGTTTCCATGCACTTTACGAGCTACACCACTCATGCTGCTGTCAATCGCGATGTTTTGTTGTCTTTGTCAATCAAACAGTGACCCAATGATGTGCGCTATTTGCACTTAGCCTAAATAGACACTCCAAAATTGGCATTTCCCCTCCCTTGCAGGGGCCCCAAGTGCACACGGTGTTGTTGTGGGTCCCAATTATTATTTTAAATACAATATTATAGAAATATATAAAGTATATTATTTAGGAAACCTGTAATCACCTAAATCAAAAATGAAAGACAAATTGTATGTGATTCCTTTTGACAAAAGATTATTTTGCTTACGTCATTGGCAGATTATTTAGCTTGTTTTAAATGGCACCTATTTTACCCTGTTTACAAGATGTAAGATAAGCCTTTGGTGTCTCCAGAATGTGTCTGTAAAGTTTCAGCTTAAAATACCCATCAGATTATTTATTATAGCCTCCTGAATCTGCCCATTTTGGTCTCTGAGAACATTGTAGCTGTTTTTGTAGCCTGTGGCTTTAAATACAAATCAGCTGCTTCTCCCCGCCCACCTTTCCCACGTGTATGTCTGCCTCTCATCATGCGTTTAGTCAGAAAAGCAACCGTCAGTGATAGAGACAGACTCGGATGAAGCTAAAATACAGCTCATTAGTCAAAAATACCAAGTAAGTTTATTTCATTTTGTGGTGGAATTTAATCAAGCCTTTCTGAAATGATGAGTCTCACACAAATGCCGTTGGCAGTAAACACAAACACACACACACACATTAGCATTTAATGACACCATGCGGCCGTAGTGATTATAGAGGTTAAGAACTACTTAGCAATTTTACGGTCTTTATTACAAACATGCTCTGTTTTAAAAACGTTTTAAACATAAAAATCACAGAGAGTTGGAACAAATTTTTTTATCCCAGTTGATTTGCAAAAAATGTTCTGTGGATGTGTGTATACATGTTCTTATACAAACATGCTGACTGACAATCAATTTGGTGGGCAGGGAAAACTGCTCTACTTCATCACATTGCGGTGGGCCTCAATATCTCTGGGATTTGGTCCTATTTTAACATCAGGAAATTTTAAAAACACTGTTTCTATCACTCCAATATGACAGTGGACACACTATACCTACACACAGGTCTATAACAGCTTACAGAAGTTGATTTTCATCATAGGTGCCCTTTAGAAAAAAAAATCACTTAATTTTGGCATATTACTTCTTAAAACAAGAAAATGTGTTTTGCTTGTCTAGAAAATGCTTCTCGGTTAAAAATTTTTTAGATATTTGAAAACAGGACAAAAAATAGCTTGCAGTGTTTAGATTAACGTTTACAGTAAAAGAAAAGTTTAAATAAAAGTTTATGATTTAATTATCACTAAAGTACTAAAATCAGTTTTGTACCTGGATAACATACAAGCTTAAAAACACAGACGGTAAAGAGATGCAAGAAATACATGTGTTAAGCCCTGCTCACACTGTAAGATTTCGGCCATGATTCTGTCATCTGAGACAAATTTAGGAAATCCTTAAAGATTCCTGGAATCCCCAGGCTACAATAGGTGATCTTTGATCGTTAGTTTGACATATTCTCTGACAGCCGCTTAGTGCCTGTTGCGATCAGATTTTTCCTCTAATGAAGTTCTGGCAGTGTCAGAAGATTTCAGACACTTTCCTGCAGTGTGACAACAGCTGTGATGAGCATCAATCCAAGAACCAATAGAAGCTCCGAATTTGATGATGCAATCCATCGACAGTTCAAACGACTGTGAGGACACGCTGTGTGCAAAATTGCCGCTACAGATTGTTTACTGTTGGAATATCAAGCCAATTCCATGCGTGTTCAAGAGAAAAGGTCTGGAGATGTTTTTCTTCAATGTCAAAAATCATAACAATTTATTGGATACAAATGAATAATTCGATGACAGAGCTCTGGGTTACATTACCCCAATGCAATACAAGAATTACATTCAAGAGGTTCGCAACTAACATACGTTTCCTGACTTCACCATATATACACAACCGATCTTAACAGGTGGAGTTTTGGTGTAACGTCACTTGTCAGTCATTGTTCAGTCCTCCATTGGCCACACCTTCGACATACTTCCTCTTTTTCTACGAATTCTCTGCCCAACAACAAAGTATACATCTTTCTGTGTTCAGTTTTAACACCTCTCTTCAGACAGGAAGTTTCTGCAGAGCTGAATTTAATTTTGGACCCGCATCTATCTACTTCTGCAAAAATGCTAATTAGTATGCACAGCACTCACCCACAACATTAGAAGTTCAGTTAATATATGACCCTTACATGACCAATACAAATAATTGTTTGATTAAAAGAAAAAGAGACAAAAATAATAAAAAATGGTTCCTATTATCCAATATTACGTTTGCTGTGAGGAATCATTTCAGAGCGCGGGATAGTGAAAGTGTCTCGAGTGGATGACGTCAAACTCCTGGGGCGTTTCCTTTCGTGTTTGGCGCGTCTTCATTATCGTTCAGTCTGACTTTATGACAGCTGAGATCTTCCAGTATATCATGCGAGCTACATTCGTGCAGTCTGACATGCTACAATCATTCAATATTATAAAAACCTCACAGTGTGAGCCACCCTTTACACAGATCATTGCAAGAAATCCTAAAATATTTCACTGTCATTTCTAAAAATTCATTCATTAATTTTTTTATTGGCCTAGTCCCCTTATTCATCAGGTGTCACCATAGTGGAATGAACCACCAACTTATTCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCTGCAACCCAGTACTGGGAAACACCCATACACTCTTACATGCACACTCATACACTACGGTCAATTAAGCTTATTCAATTCACCTACAGCACGTCTTTGGACTTTGGAAGAAACCCACCTGAACAGAGGGAGAACATGCAAACTCCACACAGAAATGCCAATTGACCCAGTAGGGACTTGAACCAGCGACTTTCTTGCTGACAGTGCTAACCACTGAGCCACCGTGTCGGCTCTTACAAAAACTGTTACAGTGTTTTGCTCTAAAAAGATCATGCAGATTTTAGAAGTTTATAGCAAAGAAAAATAAATAACTGTTAGGTAATGAAGATGAAGGTAATGAAGATTTACACTCTTTTATTCATTCATTAATTTTCTTGTCGCTTAGTCCCTTTATTAATCCGGGGTTGCCACAGAGGAATGAACCAGCAACTTATCCAGCATGTTTTTACGCAGCAGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACACTCTTTTACCTGTTAAATAATATCTGGAGTATACATTGGTTGAATTTTTTGCAGTGTATTAGTGAAGTGATTTGGATGCAGCTGCGTCCCAAATCGCATACTTGCGCACTATTCTACGGCATTTTGTAGTATAAATAGTGTAAGTAGTGGTTTTACACTGAAAACTCTAAAAATAATATGTGCATTTTATTATTTATTTATAATTTCCCGGATGATGCACTCATTCAGCCGCTAAAATTGTGTGTAATGATGGACACTTCTCGCCCTCAACAACCGCAGCTTTGCTCACATAGCAGGAGGGGCGGAGCTTTCGGGCACAAATGTTGGATAACTATTATTTTGGATGGTGAAAGCGAAATTCTCCAATGAGGGTGATTATAGCGCCTCCCGATGGAGAATGCGGTTATACTCATGGCAGGTATTTATTTGATAGTTTGGTCATTTATTTCACTCATTTGGCAACCGTCATCAGGAAAACGGTTTGAATTTCCCGCTTAAAAAAACATTAGTGCTCCATTTTGGACGACACTACATACATGTACTACGCTGTTGAGTGTGTAAGTGCATAAGTACATAGTGCATGAGTGCATGAGTGCATAGTGTGCCATTTGAAACGCAGCTCACAGTTAAATCATATGTCTTACCTTACAACAACTAAAAATGCCCTAAACAACTGCCTAGCAACACTACTTCTTACTATTTTTAAAAACCGTATGGAAAAATAATCAAACAGAAACACGTCATTGAGAATGAGTAAGTGAGCATTCATCCACATAGCGCTGTGCATCATCAGACCAACTTGATTTTAAAGTTTTACCAGCCAGGAAAGAGATTATCATCAATTCTGACAACAGCAGACGAGTATAGCACTGAAATAGTAGAATCTGCTCTGTTTTCATCTTCAG
Seq C2 exon
AGTCCTGATCTAGAGAACGCCAAAGACTCCAGGCCTGCTGTTCCCATAGAGACGACCTCTGATGTCACCGCGGCGACTCCACTAGTGACGGACACACAGTGGGAGGCGGAGCTTGGGCTGAAGCCTGCGGAGAACGAGGCGTCTGCGTCACAGCAGCCCAGAGCGCTCCAGATGTCCATCAGACAGGCATCTCTCCCAGATTCAGCACCCGCTGCAGGCCACACACCCGCTCTCCACAGGCCCTCCTCTGATCCCGGCCTTCCAGGGCAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687:ENSDART00000151288:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.660 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]