Special

MmuINT0085532 @ mm9

Intron Retention

Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62541003-62544165:-
Coord C1 exon
chr2:62543973-62544165
Coord A exon
chr2:62541270-62543972
Coord C2 exon
chr2:62541003-62541269
Length
2703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTTTCTTACCTTTTACCAGTGT
3' ss Score
7.61
Exon sequences
Seq C1 exon
ACTTGAATCCCAAATGACAACGGACATCCAGGCCATCTTGCAGCTCCTGCAGAAACAAACCACGGTAGTCCCTCCAGCCTACAGCATGGTGACTGCAGGAGCAGAGTACCAGAGGCCCATCCTCCGTCTGTTGAGAACCAGTCACCCCAGAGCATCCATTAAGACTGACCGGAGTTTCAGCCCCTCCTCACAG
Seq A exon
GTGAGTGTAGACACTGCAAAACTAACTGTGACTCTTTGAGCATATCTCCAGGGATCACCTGAGTAAGACTCACTTATGGAAAGCACGGATTTCTGTCCCCATCTATTTAAGCTCAAGGGTTTGTGTAAACTGGGCCTGTGTTTTGCAGTATGTGCCCTTAAAAGTTGCAAACGACAGCCTTTTTATAAAAAAGAATTTTATTTGTTTACATTTCAAATACTGTTCCCCTTCCGGTTTTCCCTCCATGAACACCCTCTCCCCCTCCCCCTCTTGCTCCCCTTTGTCTCTAAGATAGTGCACCCCCTACCACCCACCCATCCATGCCTGCTTCAACCTCCTAGCATCTCTCTGATATCAGATAATGCAATCCTTCACTTCACATGTGGGGATGGGGAGCATGGACCAAACTACATGTACTATTTGGTTGGCGATTTAGTCCCTGGGAGCTCTGAGGGGTCTGAATAGTGTTGTTCTTCCTATGGGGTTGCAATCCCCTTCAGCTCATTCAATCCTTCCCCTAACTCTTCCATTGGGGTCGCTGAGCTCAGAAAATGGTTGACTGTGAGTATCCGCATCTCTCTTAGAGCCTCTTAGAAGACAGCTATACCAAGCTCCTGTTTGCAAGCACTTCATGGCATCAGAAATAGTGTCAGGGTTTGGTATCTTCAGATGGGAGGGTTCCCAAAGCTGGGCAGTCTCTGGATAGTCTTTCTCTCAGCCTCTGCATCATTTTTGTCTCTGTGGTTTCTTTAGACAAGAACAATTCTGGGTTAAATTGGTCAGAGAAGAAATAAAGGAAGAAATCAAAGACTTTCTAGAATTTAGTGAAAATGAAGGCACAGCATACCCAAACTTATGAGACAAAATGAAAGCAGTACTAAGAGGATAACTCATAGCTCTGAGTGCCTCCAAAAAGAAATTGGAAAGAGCATACACTAGCAGCTTGACAGCATCTGAACGCTCTAGAACTAAAAGAAGCAAACTCACCCAAGAAGGGTAGACAGCAGGAAATAATCAAACTCAGAGCTGAAATCAACCAACTAGAAATAAAGAGAACTACACAAAGAATCAATAAAACTAAGAGCTAGATCTGTGAGAAAATCAGCAAAATAGAGAAACTCTTAGCCAAACTAATTAAAGGACACAGAGACAGTATCCAAATTAACAAAATCAGAAATGAAAAGGAGACATAACAGAAACTGAGATTTTTTTTTAAATCCTCAGATCCTACTCCAAAAGCCTATACTCAACAAAACTGGAAAATTTAGATGAAATAAACAATTTTATAGACAGATACTACACACCAAGGTTAACTCAGGATCAGATAAACTATCTAAACAGTCCCAAAACCCCTAAGGAAATAGAAGCAGTCATTAAAAGTCTCCCAACCAAAAGAAACCCAGGGCCAGATGGTTTTAGTGCAGAATTCTCTCAGACCATCAAAGAAAACCCAATACCATTACTTCTCAAACTATTCTACAAAATAGAAACAGAGGGAACAATACCCAATTCATTTTGGAAAGTCACAGTTATGCTGATACCTGAAACACATAAAGACTCAACAAAAAAAGAGAACTTCAGACCAACTTCCTTATGAGTATTGATGCAAAAATACTCAATAATATTCTCACAAACAGAATCCATGAACACATGAAAATGATCATTAACCCCGATCAAGTAGGCTTCATCCCAGTGATGCAGGGATGGTTCAATATATGGGAAAGATCAGATATTCAAGGCACATACCTAAACATAATTAAAAACATATATACAGCAAAACAACAGCCAACATCAAATTAAATGGAGAGAAGCTTGAAGCAATCCCACTAAAAGCAGGGACAAGACAAGGCTGCCCACTCTTTCCCTATTTATTCAATATAGTACTCAGAGTTCTACCCAGAGCAATTAAACAACAAAAGGAGGTCAACTGGATACAAATTGGAAAGGAAGAAGTCAAGGTATAACTATTCACAAATAACAGACTTAAAGAAAAATTTAAACAGTAACATTTATGTGTACATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGAGTGCATGTGTTGTGTGAGTGTGTGTGTGAGTGTGTATGTGTGAGTGTGTATGTGAGTGTGTGTGTGTGTGTGTGTGTGTAAATGAATGGAATAATTAATTTTTAAAAAGTAAATAAATAAAAATCAAAAGAATTTGTAGACAATTTTGTGACCATTTCTGTGTGGAAATTAAAAGTAAGATACTCTAGAAAGTGAAACAATGTGCCAACAGAAGTTAGCATGTCAGAAGAAAAATAATGACAATCTTTCTAAGATATAAAAGTTAATTTATCTGTGACTGTTTTTGATGGATGGGAAAGATACGCAACTATATTTTTTTATTCTTTGTAGTTGGTTTACACTGTAATTTCTGATAGGAATGGTGATTTTATTTCATTTATCTCTTTCTTTTGAATACTTAGAAAACAAAACAAAACTGAACTGAACTTTTAGATCTGGCTGTAGAGTGAAAGTTAAGTTCTTCATCTGAGATCACAGACCCCTTAATGTCTAGACCATTTTAGGAGAGAGATGCTGGCTCATACCCTTAGTCACATACAATAACTGGGTAGAGAACACACCTCTGGGTCAGTTATGTGAACGTAATTTTAGTTCACTATTGGAGTGAATTGTAAAAGTGCATTTTCTTACCTTTTACCAG
Seq C2 exon
TGTCCTGAATTTCTCGACCTCGAAAAATCCAAACTCCAATCCAAAGAGTCACTCTCAAGCGGAAGGCGCCTGAACACAGCTTCCGAAGACAACTTGACTTCCCTTTTAAAACAAGACAGTGATGCGTCATCAGAGCTTGACCCTCGGCAAAGGAAAACTTACCTTCATCCCATCCGGCATCCCTCTCTGCCAGACTCCTCCCTAAGCACTGTAGGGATCTTGGGTCTCCATAGGCATGTCTCTGACCCTGGTCTTCCAGGGAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-Kcnh7:NM_133207:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.338 A=NA C2=0.818
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000074563f6278A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000074563
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr2:162372096-162373469 
ALTERNATIVE
HsaINT0084378
(KCNH7)
Human
(hg19)
chr2:163228606-163229979 
ALTERNATIVE
HsaINT0084378
(KCNH7)
Rat
(rn6)
chr3:48671545-48675030 
LOW PSI
RnoINT0077792
(Kcnh7)
Cow
(bosTau6)
chr2:34159930-34162781 
BtaINT0079618
(KCNH7)
Chicken
(galGal4)
chr7:20533905-20535201 
LOW PSI
GgaINT0048097
(KCNH7)
Chicken
(galGal3)
chr7:22589087-22590383 
ALTERNATIVE
GgaINT0048097
(KCNH7)
Zebrafish
(danRer10)
chr6:10335438-10340957 
ALTERNATIVE
DreINT0013155
(KCNH7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"