RnoINT0077792 @ rn6
Intron Retention
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48671241-48675223:-
Coord C1 exon
chr3:48675031-48675223
Coord A exon
chr3:48671545-48675030
Coord C2 exon
chr3:48671241-48671544
Length
3486 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTTTGTTATCCTTCCACCAGTGT
3' ss Score
8.62
Exon sequences
Seq C1 exon
ACTTGAATCCCAAATGACAACGGACATCCAGGCCATCTTACAGCTCCTGCAGAAACAAACCACCGTAGTCCCTCCAGCCTACAGCATGGTGACCGCAGGAGCAGAGTACCAGAGGCCCATCCTCCGTCTGCTGAGAACCAGTCACCCTAGAGCATCCATTAAGACAGACCGGAGCTTCAGCCCCTCCTCACAA
Seq A exon
GTGAGTGTAGACAATATAAAACTGACCATGACTCTTTAAGCATATCTCCAGGGATCACTGAGTAAGAATCACTTGTGGAAAACATCTGTTGGTGCTCAAGGGTTTCTGTAACTTGAGCTTATGTTTGTATACCGTGCCCTTAAAAGTTGTGAACAACAGACTTTTTAAAATTATTTTATTTGTTTATATTTCAAATGTTGTTCCCCTTCCTGGTCTCCGCTCTGTGGACTCCCCTCTGCTGCTGCTCCTCTTCACCTCTAAGAGGGTGCTCCCACACCCACCCATTCCAGCTTCACCCCTCTAGCATCCTTCTTTATGGGGCAACAAGCCTTCACAAGACCAAGGTCCTCCCTTCCCCTTGATGCCAGATAAGGCCATCCTCTACTACATATGTGGGGAAGGGGGAGGGAGGCATGGGCCAACTCACATGTACTATTTGGTTGGTGATTTAGTACTCGGGAGCTTCTGAGGGATCCTATTAGTTGATATTGTTGTTCTTCCTATGGGGTTGCAATCCCCTTCAGCTCCTTTAGTCCTTCCCCTAACTCTTCCATTGGAGTCCCAGAGCTCAGTCCAGTGGTTGACTGTGAGTATCTGCATCTCTCTTAGTCAGGTGCTGGCAGAGCCTGTCAGAGGACAGCCATACCCGGCTCCTGTCGGCAAGCACTTCTTGACATCAGCAATAGTGTCAGGGTTTGGTGTTTGTGGATGGGGTGGATCCTAAAGTGGGACAGTCTCTGGATGGCCTTTCCCTCAGTCTCTGCTCCATTTTTGTCCCTGTGGTTCCTTTAGACAGGAACAATTCTGCGTTAACTTAGACAGGGAAGAAATAAAGAAATTAAAGACTTTCTAACATTTAATAAAAATAAAGACACAGCATACCCAAACTTATGGGACACAATGAAAATAGTGCTAAGAGGAAAATTCATACCACTAAGTGCCTTTATAAAGAAATTGGAGTGATCCTACACTAGCAACTTAAGAGCACATCTGAAAGCTCTAGAACCAATGGGAGCAACCATACCCAAGAGGAGTAGAAGGCAAGAAATCATCAAACTCAGAATTGAAATCAACCAATTAGAAACAAAGAGAACTATACAAAAAATCAACAAAACTGAGATGTGGTTCTTTCAGAAAATCAACAAGATAGACAAACCCTTAGTCAAACTAATTAAAGGGCAGAGAAACAGTATTCAAACTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGAAACTGAAAGAAACTAAAAAAAAAAAAAAGAAAAAATCAGATCCTTCTACAAAAGCCTATATTCAATAAAACTGGAAATTTTAGACGAAATGGACAATTTTCTAGACAGATACCACATACCAAAGTTAACTCAGAATGAGATAAAATATCTAAACAGTCCCATTACCCCTAAGGAAATAGAAGCAGTTATTAGAAGTCTTCCGGGGCTGGGGATTTGGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAGAAAAAAAAAAAGAAGTCTTCCAACCAAAACAAACAAACAAACAAACAAACAAACAAACCAGGGCCAGATGGTTTTAGTGCAGAATTCTATCAGACCTTCAAAGAAAACCTAATACCAATACTTCTCAAACTAGTCCACAAAATGGAAACAGAAGGAACACTATCTAAGTTGTTCATGAAGGCACTGATAACTAAACCACATAAAGACCCAACCAAAAAAAAGAGAGAGAGAGAGAGAACTTCAGACCAATTTCACTTGTGAAATATCAATGCAAAAATACTCAATAAAATTCTCACAAACAGAATCCAAGAACACATCAAAATGATCATCCATCATGATCAAGTAGTCTTCATCCTAAGGATGTAGGGATAGTTCAATATATGGAAATCCATGAACAACGAAATTCACTATATAAACAAACTCAAAGGGAAAAAAAACACATGATCATCTCATTAGATGCTGAAAAAGCCTTTGACAAAATTCAAAACCCCTTCATGTTAAAAATCTTGGAAAGATCAGGAATTCAAGGCCCATACCTTAACATAATAAAAACAATACACAGCAAACAACCAACATCAAGTTATGTGAGGAGAAACTTAAAGCAATCCCATTAAAATCAGGGACAAGACAAGGCTGCCCACTCTCTGCCTATTTATGCAATGTAGCACTCAAAGTTCTACCTAGAACAATTAGACAACAAAAGGGAGTCAATGGGATACAAATTGGAAAGGTGTATGCCCGTAGAGGCCAGAGGACAAACATCAGGTTTCTTTCTAGATAGTTCTCTGTCTTGTTTTTGAGACAGGTACATTATTATTTTTAAGACCACTCTCTCACTGAACCTACATCACTGACTTAGCTAGCTTGTCTATCCTGGCTGTCTAGCAATCTCCAGGGACCCTCTACCCGAATACCTCAGTGCAGGCATTACAGGTGCTTAACATCCAGTGTTTGACCATGTACTTGTGAGACAGTACCTTGCCCTACCCCTAAACATTAACATTTACTTAAAAGAAAAAGTTATTACTCAAGAACCAACCTATATAAATGGGTGTACTGTAAGGGTTTTAATGGTAAAGGATGGCTCTTTATTAATTTAAGAAGAAAATCAACAACACAAGTAGAGAGAAAAATCCTGTAACTTGCTATGGTACAAAAAAAAAAAAAAAAAAAAAAAACAGCATAGGCCCTGGAGAAGAAGAGAGATGCTAGTGAACTGGACTAGAGCAATCAGACTGGCTAATGCATCTGTGCTCTACTCTTCATGTTATCACGCAAATGACAGTATAGGTAAGATAAGGCGTGTGAAGGACCCTTTATCCTGATTCTAAGCTTCTGATAGTGTCCCTTTCAGTTATTTATGCCTGGAGGGCAATCAAATGGAAGAAAGATTATTTCAATAAAAATCTGTAGACAATCTTGTGGAAATCACCCTGTGGAAATTAAGTGTAAAATATTCTAGAAAGTGAAACAATGGGATAACAGAGGTTAGCATGTCAGAAGAAAAATAATAACAACCCAAAATATAAAAGTTAATTTATCTCTGGTTTTGAATGGATGGGAAATACATGCAACTATATTTTGATTCTTTGTATGTAATTGTTTTAGATTACATTTCTGGTAAGAATGGTGATTTTATTTCCCTAATCTCTTTCCTTGTTAGATAAAACTAGTCACCAAGAGACATTTCTTAAACCAGTCTTATTTTTAATTAAAACCTATACAACTCAAAGTTGGATATTTAGAAAAAAAAATCCTGAACTTTTAAATCTGGCTCGAGAGTGAAATTTTCTCTACCTGAGATAACAGATTAGGGAATGTCTTGACCATTTTAGGAGCTGTTGGCCAATACCCTTAGTTGCATACAATGACTGAGGAGAGAATGTACCTCTGGGTTATGCGAGCATAATTTTAATTCACGGTTGGAGTGGATTGTAAAAGTGCATTTTGTTATCCTTCCACCAG
Seq C2 exon
TGTCCTGAATTTCTCGACCTTGAAAAGTCCAAACTCAAATCCAAAGAATCACTGTCAAGCGGAAAGCGCCTGAACACAGCTTCAGAAGACAACTTGACTTCACTTTTAAAACAAGACAGTGATGCATCGTCAGAGCTTGACCCGCGGCAAAGAAAATCTTACCTTCATCCCATCCGGCATCCGTCTCTGCCAGACTCCTCCCTAAGCACTGTAGGGATCTTGGGTCTCCATAGGCATGTTTCTGATCCTGGTCTTCCAGGAAAGTAATTGTTTTGTACTATTTCTCCACATCCAATGTAAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528:ENSRNOT00000009920:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]